PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v2581160.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family LBD
Protein Properties Length: 247aa    MW: 25610 Da    PI: 8.4059
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v2581160.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.82.1e-39311311100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      +C aCk+lrrkC+++C++apyf +eq +++fa+vh++FGasnv+kll ++p+++r da+ ++++eA+ar+rdPvyG+vg+i++lqqq++ l+ae
  Lj1g3v2581160.1  31 PCGACKFLRRKCVAGCIFAPYFDSEQgSAHFAAVHRIFGASNVSKLLLNIPPNRRLDAVITICFEAQARLRDPVYGCVGHIFALQQQVMALQAE 124
                      7***********************9989****************************************************************** PP

           DUF260  94 lallkee 100
                      +  l+++
  Lj1g3v2581160.1 125 ITFLQAH 131
                      *998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.46130132IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-3831129IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MSLNSCSSGG SGSGGNASGS GCGGGGSSSS PCGACKFLRR KCVAGCIFAP YFDSEQGSAH  60
FAAVHRIFGA SNVSKLLLNI PPNRRLDAVI TICFEAQARL RDPVYGCVGH IFALQQQVMA  120
LQAEITFLQA HIPTTELQMP PPPPPPQAAV APPAFSISDL PSTTTVAMPA ANYDLSALFD  180
PLPSWAVQQR AMDPRQYLAT GPSPTTSGAF HAVAREYAHR HGPAAPGPYG PHGPSSNASS  240
SLSKFSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-36281258104LOB family transfactor Ramosa2.1
5ly0_B7e-36281258104LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves and flowers (PubMed:12068116). Expressed in vascular tissues of hypocotyls, leaves, roots, developing floral organs and siliques (PubMed:19088331). {ECO:0000269|PubMed:12068116, ECO:0000269|PubMed:19088331}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269|PubMed:19088331}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v2581160.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0090730.0AP009073.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT43J08, TM1255, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012475250.12e-87PREDICTED: LOB domain-containing protein 18
RefseqXP_016682093.11e-87PREDICTED: LOB domain-containing protein 18-like
SwissprotO813239e-67LBD30_ARATH; LOB domain-containing protein 30
TrEMBLA0A0D2MZ414e-86A0A0D2MZ41_GOSRA; Uncharacterized protein
TrEMBLA0A1U8J0H63e-86A0A1U8J0H6_GOSHI; LOB domain-containing protein 18-like
STRINGGorai.004G161100.16e-87(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00220.17e-64LBD family protein
Publications ? help Back to Top
  1. Rast-Somssich MI, et al.
    The Arabidopsis JAGGED LATERAL ORGANS (JLO) gene sensitizes plants to auxin.
    J. Exp. Bot., 2017. 68(11): p. 2741-2755
    [PMID:28472464]
  2. Liu C,Yu H,Li L
    SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana.
    PLoS Genet., 2019. 15(1): p. e1007928
    [PMID:30657769]