PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v2809220.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family M-type_MADS
Protein Properties Length: 179aa    MW: 20843.9 Da    PI: 5.7962
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v2809220.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.54.1e-141049342
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                     i + s r+ t+ +R++g+lKK eEL +LC+++v+ +++s+
  Lj1g3v2809220.1 10 IVDGSSRKATYVRRKKGMLKKLEELTTLCGIDVCAVVYSE 49
                     667789********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.367149IPR002100Transcription factor, MADS-box
SMARTSM004328.7E-13159IPR002100Transcription factor, MADS-box
CDDcd002668.46E-22184No hitNo description
SuperFamilySSF554551.83E-21393IPR002100Transcription factor, MADS-box
PfamPF003191.2E-131049IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MGNKVNLEYI VDGSSRKATY VRRKKGMLKK LEELTTLCGI DVCAVVYSEF HHQPLVWPSP  60
PEVQRMINNF NNYSEFGKSK NMMNQESFLE EKILKATEKL AKFEKENREM EMSMRMFELM  120
ANGNIIDNMN NVELNDMAWI IDEKLKHVNW RITELDNKAS TSQSQAQMAD EAVKPIDKE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11530RKATYVRRKKGMLKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v2809220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004500453.16e-56agamous-like MADS-box protein AGL80
TrEMBLA0A1S2Y7721e-54A0A1S2Y772_CICAR; agamous-like MADS-box protein AGL80
STRINGXP_004500453.12e-55(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-38AGAMOUS-like 80