PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj1g3v2925250.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

ZF-HD

Protein Properties

Length: 237aa MW: 26008.8 Da PI: 6.8278

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj1g3v2925250.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	79.6	4e-25	52	103	8	60
ZF-HD_dimer 8 eClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 C+k hA+s GghavDGC+Efm++ g+egt +a+ CaAC+CHRnFHR+e + e Lj1g3v2925250.1 52 XCQKTHAVSFGGHAVDGCCEFMAA-GDEGTLEAVICAACNCHRNFHRKEIDGE 103 6********************9.999******************98865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51523	23.535	50	99	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	6.2E-23	52	100	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	5.4E-22	53	100	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	8.0E-17	53	107	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	6.1E-20	159	235	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.1E-30	162	236	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	6.2E-24	174	231	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MEFDEQEEQD EEMGIPESPP PVPASYDPLL NSAPRSKIAE VSAPVIGRKG GXCQKTHAVS 60 FGGHAVDGCC EFMAAGDEGT LEAVICAACN CHRNFHRKEI DGETVASCQR QQPPPPPGHH 120 HQYHSQFSPY YHRGPQHHAA LALPPATSGG GFSREEEDMS NPSSSGGGGG GGMKKRYRTK 180 FTPEQKEKML AFAEELGWRI QKHQEAAVEQ FCAETCVRRN VLKVWMHNNK NTLGKKP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	1e-29	175	232	18	75	ZF-HD homeobox family protein
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.5178	1e-144	floral bud

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mostly expressed in flowers and, to a lower extent, in inflorescence, stems and leaves. {ECO:0000269\|PubMed:16428600}.

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein. Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj1g3v2925250.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004968	1e-163	AP004968.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT43O24, TM0145, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003615230.1	1e-100	zinc-finger homeodomain protein 2
Swissprot	Q9SB61	1e-64	ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBL	G7KBF3	3e-99	G7KBF3_MEDTR; Homeobox domain, ZF-HD class protein
STRING	AES98188	1e-100	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF206	34	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	6e-61	homeobox protein 22

Publications ? help Back to Top
Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]