PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj1g3v2953600.2

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

WRKY

Protein Properties

Length: 251aa MW: 28211 Da PI: 6.9099

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj1g3v2953600.2	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	60.5	3.2e-19	211	249	1	38
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEE CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkv 38 ++Dg++WrKYGqK kg+++pr+YYrCt a Cpv+k+v Lj1g3v2953600.2 211 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApACPVRKQV 249 58*************************99*****9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.8E-19	196	249	IPR003657	WRKY domain
SuperFamily	SSF118290	6.15E-17	204	249	IPR003657	WRKY domain
PROSITE profile	PS50811	19.026	206	251	IPR003657	WRKY domain
SMART	SM00774	5.5E-10	211	251	IPR003657	WRKY domain
Pfam	PF03106	1.2E-16	212	249	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006952	Biological Process	defense response
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MSKNSSPSGS EIEEKRVTSV FLDDGFSNQE VKKVERLKSA KAEMGEVKEE NERLKMMLNQ 60 VEKDYHSLQL RFFDILHKEV SNKGVAENSP TPHDHENEEP ELVSLCLGRG PRESKKGAII 120 EKLNQPREKE DVEVNLSLGL ESKYLLSMEV VSDLSPVNSS EELPKEVELA EGTLKTNKSA 180 KVVNVNDDIS DQMPAKKARV SVRARCDTPT MNDGCQWRKY GQKIAKGNPC PRAYYRCTVA 240 PACPVRKQVY A

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.18314	0.0	root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, trichomes and fruits. {ECO:0000269\|PubMed:24884371}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269\|PubMed:20409007, ECO:0000269\|PubMed:24884371}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj1g3v2953600.2

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269\|PubMed:20409007}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT146231	0.0	BT146231.1 Lotus japonicus clone JCVI-FLLj-21B16 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004489160.1	1e-118	probable WRKY transcription factor 72
Swissprot	A0A3Q7GFB5	1e-60	WK72A_SOLLC; WRKY transcription factor 72A
TrEMBL	I3T0I3	0.0	I3T0I3_LOTJA; Uncharacterized protein
STRING	XP_004489160.1	1e-117	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	1e-53	WRKY DNA-binding protein 72

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]