PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v2975990.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family Dof
Protein Properties Length: 500aa    MW: 54310.1 Da    PI: 8.6086
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v2975990.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.31.9e-39131191262
           zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                      ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvP+G+grrknk+ss
  Lj1g3v2975990.1 131 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCHRYWTAGGTMRNVPIGAGRRKNKNSS 191
                      7899******************************************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-30124188IPR003851Zinc finger, Dof-type
PfamPF027015.5E-32133189IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.817135189IPR003851Zinc finger, Dof-type
PROSITE patternPS013610137173IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MSETRDPAIK LFGKTIPLPE IAAGSGYSAG DENHASSTDS SRESHTNRVV AQKQQETVKD  60
TLGENPTDIK KEDGVPMQLA KEITNTDTTS RTGEEAVTLS TERGSTTLKT SKTEEGQSET  120
SNSQDKNLKK PDKILPCPRC NSMDTKFCYY NNYNVNQPRH FCKNCHRYWT AGGTMRNVPI  180
GAGRRKNKNS SPINRPITVS EAMLQNTRTD LPNGAAHHPS LKVNGTVLTF GSNTLTFGSK  240
TPLCESMTSA LNLADKSVPN YTRNGFHSSE ELRIHVPHGS GEKGDDQSNK SSVTSAKSMD  300
KTSTNGPQEQ DKQNYQSFSP QAPYYPGTAW PSPWNPVQWN SPPPPPVFCS PGFVALPFYP  360
ATTWGCTIPG ALNTPWLAQP STPNGATANS GPNSPTLGKH LREENMLKSN ESTSGNGHNK  420
EKCLWVPKTL RIDDSGEAAK SSLWTSLGIK NDKAESVPGG GLFKAFTSKH DEKNHSVQAS  480
PLLQANPAAF SRSLNFHETS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00046PBMTransfer from AT5G39660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v2975990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150372e-79AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020220035.10.0cyclic dof factor 2 isoform X1
RefseqXP_020220036.10.0cyclic dof factor 2 isoform X1
TrEMBLA0A151TC810.0A0A151TC81_CAJCA; Dof zinc finger protein DOF5.2
STRINGGLYMA18G49520.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62534147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.21e-101cycling DOF factor 2