PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v2979260.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 244aa    MW: 27503.9 Da    PI: 9.0176
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v2979260.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.65.1e-173380148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed+ll+ +v+ +G g W++++++ g++R++k+c++rw++yl
  Lj1g3v2979260.1 33 KGSWTKVEDDLLKACVQHYGEGKWHLVPQRAGLNRCRKSCRLRWLNYL 80
                     799*******************************************97 PP
2Myb_DNA-binding48.81.6e-1586131148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg ++++E +l ++++k+lG++ W++Ia +++ gRt +++k++w++y+
  Lj1g3v2979260.1  86 RGDFSEDEVDLMIRLHKLLGNR-WSLIAGRLP-GRTSNDVKNYWNTYM 131
                      899*******************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.3852880IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-222983IPR009057Homeodomain-like
SuperFamilySSF466894.4E-2830127IPR009057Homeodomain-like
SMARTSM007171.5E-143282IPR001005SANT/Myb domain
PfamPF002498.8E-163380IPR001005SANT/Myb domain
CDDcd001672.49E-103580No hitNo description
PROSITE profilePS5129423.87981135IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.0E-2284133IPR009057Homeodomain-like
SMARTSM007175.5E-1485133IPR001005SANT/Myb domain
PfamPF002496.8E-1486130IPR001005SANT/Myb domain
CDDcd001673.44E-1089131No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGKGSSNEVS DLSFTNSFAT SHQKEGSPAG VRKGSWTKVE DDLLKACVQH YGEGKWHLVP  60
QRAGLNRCRK SCRLRWLNYL RPNIKRGDFS EDEVDLMIRL HKLLGNRWSL IAGRLPGRTS  120
NDVKNYWNTY MRSRAQCSYS KKDKNLKPHQ VIKPVPRTFS KPKPKPSSDH HSNSEVNVSS  180
QLVAACAASS SGSTNWWETL LDDMGDDNTI ALDEELVASI TTNACDFLTE SDQTWSDFLL  240
NVKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-23331354105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00213DAPTransfer from AT1G66370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v2979260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0049627e-31AP004962.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT28H14, TM0141, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027351421.11e-100transcription factor MYB90-like
SwissprotQ9FNV91e-60MY113_ARATH; Transcription factor MYB113
TrEMBLA0A445J5651e-91A0A445J565_GLYSO; Transcription factor MYB113
TrEMBLK7LFP21e-91K7LFP2_SOYBN; MYB transcription factor
STRINGGLYMA09G36983.12e-92(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.16e-63myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]