PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v3053740.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family M-type_MADS
Protein Properties Length: 185aa    MW: 20186.4 Da    PI: 10.6723
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v3053740.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.81.1e-31959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++gklye++s
  Lj1g3v3053740.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSTRGKLYEFCS 59
                     79***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.9E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.361161IPR002100Transcription factor, MADS-box
CDDcd002653.78E-40261No hitNo description
SuperFamilySSF554554.32E-30263IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-33323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.6E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-333859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIVFST RGKLYEFCSS  60
SSTIPSFVVT NSMPRKRLSV PKLVISNSDL IFTLNSSIYL RSPPMVGSHT SSSSNGAFRN  120
ADFTSNLNSD HPLPLAKAIT TLMVSILATS ENTSVKSKPA LGRNPLATNL ALCLATDLYG  180
LNFSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-19161161MEF2C
5f28_B3e-19161161MEF2C
5f28_C3e-19161161MEF2C
5f28_D3e-19161161MEF2C
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v3053740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0103701e-135AP010370.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT35J19, TM0163, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGTRIUR3_19009-P17e-37(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.33e-38MIKC_MADS family protein