PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v3053790.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MIKC_MADS
Protein Properties Length: 253aa    MW: 28875.9 Da    PI: 9.7373
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v3053790.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.73.1e-28959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krienk+  qvtfskRr+g+lKKA+E+SvLCda+va+iifss+gkl+eyss
  Lj1g3v3053790.1  9 KRIENKTSLQVTFSKRRTGLLKKANEISVLCDAQVALIIFSSKGKLFEYSS 59
                     79***********************************************96 PP
2K-box86.74.7e-2976169497
            K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                      ++   ++++++ +++ e+ kL ++++ L+r++R+++G+dL++Ls k Lq+LeqqL++slk+iR++Kn+++ ++i+e+ kk ++lqe+n +L k+
  Lj1g3v3053790.1  76 TECAGTDHETQGNWSFEYMKLTAKVQVLERNIRNFVGQDLDPLSTKVLQSLEQQLDTSLKRIRTRKNQIMNQNISEMHKKTRALQEQNSKLAKM 169
                      555567788899*******************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.7E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.628161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-31289IPR002100Transcription factor, MADS-box
CDDcd002653.79E-41275No hitNo description
PRINTSPR004044.1E-29323IPR002100Transcription factor, MADS-box
PfamPF003192.0E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-293859IPR002100Transcription factor, MADS-box
PfamPF014861.0E-2583169IPR002487Transcription factor, K-box
PROSITE profilePS5129714.01386177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MGRGRVQLKR IENKTSLQVT FSKRRTGLLK KANEISVLCD AQVALIIFSS KGKLFEYSSE  60
PSVEDILERY ERYNHTECAG TDHETQGNWS FEYMKLTAKV QVLERNIRNF VGQDLDPLST  120
KVLQSLEQQL DTSLKRIRTR KNQIMNQNIS EMHKKTRALQ EQNSKLAKMK EKEKTKKLTD  180
EGPQSCPETT GQHCSSTSNL YSPKLMPPQT QFPSLTHGET LQARLSLEET VEARIAPSSG  240
TLIPPWMLHH LTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-19174173MEF2C
5f28_B1e-19174173MEF2C
5f28_C1e-19174173MEF2C
5f28_D1e-19174173MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in tendrils and flowers. {ECO:0000269|PubMed:15247405}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v3053790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027927073.11e-128truncated transcription factor CAULIFLOWER A-like
SwissprotD7SMN63e-88FULL_VITVI; Agamous-like MADS-box protein FUL-L
TrEMBLA0A0S3RRM61e-128A0A0S3RRM6_PHAAN; Uncharacterized protein
STRINGAES777391e-127(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.18e-73AGAMOUS-like 8
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]