PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v3102660.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family CO-like
Protein Properties Length: 399aa    MW: 44058.7 Da    PI: 5.5279
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v3102660.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.32.4e-062061338
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                     +r+C+++ +   + fC+ ++ +lC+ C  + H        H+
  Lj1g3v3102660.1 20 PRVCDTCRSATCTVFCRADSAYLCAGCDAQVHAAnrvasrHE 61
                     689***************************995555666665 PP
2zf-B_box23.89.5e-0863108342
         zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                       ++C+ +e  ++ + C+ +   lC +C   +H+       H +vp+
  Lj1g3v3102660.1  63 VWVCEACECAPAAFLCKADAASLCSSCDADIHSAnplasrHHRVPI 108
                      689*****************************66899999877775 PP
3CCT70.25e-24330373144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  Lj1g3v3102660.1 330 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 373
                      9*****************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.5941865IPR000315B-box-type zinc finger
SMARTSM003362.7E-91865IPR000315B-box-type zinc finger
CDDcd000215.23E-82165No hitNo description
PROSITE profilePS5011910.73661108IPR000315B-box-type zinc finger
PfamPF006431.2E-662108IPR000315B-box-type zinc finger
CDDcd000214.81E-764108No hitNo description
SMARTSM003365.2E-666108IPR000315B-box-type zinc finger
PROSITE profilePS5101716.648330372IPR010402CCT domain
PfamPF062037.9E-18330372IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009909Biological Processregulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048576Biological Processpositive regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MLEHDLFTST STTTVKAKFP RVCDTCRSAT CTVFCRADSA YLCAGCDAQV HAANRVASRH  60
ERVWVCEACE CAPAAFLCKA DAASLCSSCD ADIHSANPLA SRHHRVPILP ISGCLYGPPA  120
NLLGGEDDGF VGGGGEMEDE EEEVVDMEDE DEAASWLLLN PVKNSNNNNN NNNNEHNQQG  180
NGFLFSGEVD EYLDLVDCNS CGENQFTTTT TTTTTDHYNH HQHQQQHQQH YGVPQKGYAG  240
DSVVPVQQQQ QQQAHHFQLG LEFEPSKAGF SYNGSSISQN VSVSSMDVGV VPDSTMRDVS  300
VSYSRPSKGT IDLFSGPALQ MSSHFSPLDR EARVLRYREK KKTRKFEKTI RYASRKAYAE  360
TRPRIKGRFA KRTDVEAEVD QMFSTTLITE VGYGIVPSF
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed throughout development.
UniprotTISSUE SPECIFICITY: Highly expressed in leaves. Expressed at lower levels in stems, flowers and siliques. Not detected in roots.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v3102660.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3712431e-138DQ371243.1 Glycine max CONSTANS-like 2a (COL2a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019453266.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 2-like
SwissprotQ965021e-127COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLQ52ZI80.0Q52ZI8_PEA; CONSTANS-LIKE a
STRINGEOY038911e-173(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38273352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.16e-90CONSTANS-like 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]