PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v3137850.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family Trihelix
Protein Properties Length: 330aa    MW: 36617.1 Da    PI: 5.2285
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v3137850.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix84.41.5e-2642134186
         trihelix   1 rWtkqevlaLiearremeerlrrgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      rWt+qe+l+Li+++ + e+r++ g+       + +p+W+ vs++++++g++r+p+qC+++w+nl+++ykkike+e++ ++e++s + + ++l+
  Lj1g3v3137850.1  42 RWTRQEILVLIQGKADAESRFKPGRaagsafgSSEPKWALVSSYCKKHGVNREPVQCRKRWSNLAGDYKKIKEWESSVKDETESFWLMRNDLR 134
                      8*********************8766677777**********************************************999999998888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.81835106IPR017877Myb-like domain
CDDcd122031.84E-1441113No hitNo description
Gene3DG3DSA:1.10.10.602.4E-542105IPR009057Homeodomain-like
PfamPF138371.4E-1242129No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MSSEQPSKPN ITTVDGEIDG AVNGSPPFAA ASDERPTARL PRWTRQEILV LIQGKADAES  60
RFKPGRAAGS AFGSSEPKWA LVSSYCKKHG VNREPVQCRK RWSNLAGDYK KIKEWESSVK  120
DETESFWLMR NDLRRERKLP GYFDREVYDV LDAPALPVAA TVVPAIEMAP EAVAREEEVH  180
IYDSNRRVAG EDGLFSDCEK DEVLASVKSV VAPVPISEKQ YLPLLRGCQV ESNGQGTPNE  240
KQPASNPEVG STSQGERKRK RLATDAAEEE TLQTQLIDVL EKNGKMLRDQ LEAQNMNFQL  300
DRQHQKDTAS SIIAVLDKLA DALGRIADKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.55580.0floral bud| flower| pod| protoplast| root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v3137850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1472130.0BT147213.1 Lotus japonicus clone JCVI-FLLj-13I23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027352057.10.0trihelix transcription factor ASR3-like isoform X1
SwissprotQ8VZ201e-101ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLA0A445JK351e-172A0A445JK35_GLYSO; Trihelix transcription factor ASR3
STRINGGLYMA08G28880.11e-172(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21653375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.14e-96Trihelix family protein
Publications ? help Back to Top
  1. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]