PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v3182310.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB_related
Protein Properties Length: 252aa    MW: 29705.8 Da    PI: 8.7714
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v3182310.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.71.5e-094585346
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +WT++E e l ++ +q+G++ Wk+Ia  +g  + + ++k+ w+ 
  Lj1g3v3182310.1 45 KWTPDEFEVLRKLQNQHGSD-WKKIAGVLG--KHPVHVKDAWRR 85
                     8*******************.********8..7899**999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.2864091IPR017930Myb domain
SMARTSM007173.4E-44289IPR001005SANT/Myb domain
SuperFamilySSF466892.87E-1044104IPR009057Homeodomain-like
CDDcd001679.73E-44586No hitNo description
Gene3DG3DSA:1.10.10.609.5E-114596IPR009057Homeodomain-like
PfamPF139211.5E-1146104No hitNo description
PROSITE profilePS500907.90988157IPR017877Myb-like domain
SMARTSM007170.07392159IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-797158IPR009057Homeodomain-like
SuperFamilySSF466891.51E-5137215IPR009057Homeodomain-like
PROSITE profilePS500906.783159212IPR017877Myb-like domain
SMARTSM0071765163214IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MILHCKSHPE VRDCWKEIGA VLPKRPHISV YYRAHILFER DETRKWTPDE FEVLRKLQNQ  60
HGSDWKKIAG VLGKHPVHVK DAWRRIRQTD TNKGRWTQDE YQQLFDLVNK DLRARAAEEC  120
RKSKHGMLRD NVSWEAISNK FGARNSARCC LKWYKQLTSP MVADGVWSDT DDYRLLNALY  180
TLDAYSMEEV DWDNLLEHRS GDMSRKRWNQ MVQYIGQHGT KSFAEQVEIL AKRFCPDLLE  240
AREAFDSKPV VG
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v3182310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0097560.0AP009756.1 Lotus japonicus genomic DNA, clone: LjT38B21, TM1912, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541381.21e-145RNA polymerase I termination factor
RefseqXP_006594063.11e-145RNA polymerase I termination factor
RefseqXP_006594064.11e-145RNA polymerase I termination factor
RefseqXP_027366502.11e-146cyclin-D-binding Myb-like transcription factor 1
RefseqXP_028198132.11e-145RNA polymerase I termination factor
RefseqXP_028198133.11e-145RNA polymerase I termination factor
RefseqXP_028198134.11e-145RNA polymerase I termination factor
RefseqXP_028198135.11e-145RNA polymerase I termination factor
TrEMBLA0A0B2SVJ41e-144A0A0B2SVJ4_GLYSO; Cyclin-D-binding Myb-like transcription factor 1
TrEMBLI1LYQ81e-144I1LYQ8_SOYBN; Uncharacterized protein
STRINGGLYMA13G19060.11e-145(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67041931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-98MYB_related family protein