PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj1g3v3218010.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

WOX

Protein Properties

Length: 256aa MW: 28790.1 Da PI: 5.3946

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj1g3v3218010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.1	4.8e-21	84	144	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ Fe + +ps+e+++e+++ l +++e++V++WFqNrRa+ k+ Lj1g3v3218010.1 84 RQRWTPTAVQLQILERIFEAgTGTPSKEKIKEITADLsqhgQISETNVYNWFQNRRARSKR 144 89***************99************************************97 PP
2	Wus_type_Homeobox	102.4	3.1e-33	83	146	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtPt+ Q++iLe+++++G+ tP+ke+i++ita L+++G+i+++NV++WFQNr+aR+++kq Lj1g3v3218010.1 83 SRQRWTPTAVQLQILERIFEAGTGTPSKEKIKEITADLSQHGQISETNVYNWFQNRRARSKRKQ 146 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.6E-17	78	148	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.738	80	145	IPR001356	Homeobox domain
SMART	SM00389	2.6E-14	82	149	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.71E-18	82	149	IPR009057	Homeodomain-like
Pfam	PF00046	7.6E-19	84	144	IPR001356	Homeobox domain
CDD	cd00086	1.31E-13	84	146	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MVMEWQKQQQ QQQQRWIPNT NANLMTDEQV ETLRKQIAVY STICEQLIDM HKTLSTHQDL 60 AGVRLGGMYC DPLMASGGHK ISSRQRWTPT AVQLQILERI FEAGTGTPSK EKIKEITADL 120 SQHGQISETN VYNWFQNRRA RSKRKQQSVS QPSGANAESE VETEVDSKDK KTKSGEVVVQ 180 PTAENMCFQN PDVCPDLQYL SPESDGGLRS TRGFDHVPSF DGMLSSSRSG YLTEKMEAPE 240 SYNLYQPAGG DYDMSG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	137	145	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00669	PBM	Transfer from GRMZM2G038252	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj1g3v3218010.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027349914.1	1e-131	WUSCHEL-related homeobox 13-like isoform X1
Swissprot	O81788	1e-77	WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBL	A0A1S2XPU9	1e-129	A0A1S2XPU9_CICAR; WUSCHEL-related homeobox 13-like
STRING	XP_004492096.1	1e-130	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1855	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	6e-80	WUSCHEL related homeobox 13

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605]