PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj1g3v3384730.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

WOX

Protein Properties

Length: 218aa MW: 24528.8 Da PI: 5.952

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj1g3v3384730.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	68.3	1e-21	78	138	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql+ Le+ F + n +ps+++++e+A +l +++e++V++WFqNrRa+ k+ Lj1g3v3384730.1 78 RQRWTPTPLQLQMLEQIFDQgNGTPSKQKIKEIAIELgqhgQISETNVYNWFQNRRARSKR 138 89***************99************************************97 PP
2	Wus_type_Homeobox	98.1	7e-32	77	140	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q+++Le+++++G tP+k++i++i+ eL ++G+i+++NV++WFQNr+aR+++kq Lj1g3v3384730.1 77 ARQRWTPTPLQLQMLEQIFDQGNGTPSKQKIKEIAIELGQHGQISETNVYNWFQNRRARSKRKQ 140 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.7E-17	74	140	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.354	74	139	IPR001356	Homeobox domain
SMART	SM00389	2.7E-16	76	143	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.07E-19	77	140	IPR009057	Homeodomain-like
CDD	cd00086	4.97E-16	78	140	No hit	No description
Pfam	PF00046	1.8E-19	78	138	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MEGEQHDISN GGGLYVKVMT DEQMELLRQQ ISVYATICDS LVEMHKAITT QQDLAGLRLG 60 NLYCDPLMVC SGHKITARQR WTPTPLQLQM LEQIFDQGNG TPSKQKIKEI AIELGQHGQI 120 SETNVYNWFQ NRRARSKRKQ LAPTTPSHAE LEAAETEAVE SPKEKRISAA ESVQVLQPYE 180 NSSSPHRLKD FYIQSPDIGF EQLLGKIEAG GCFSSYFL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	131	139	RRARSKRKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.21976	0.0	cell culture

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj1g3v3384730.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT142921	0.0	BT142921.1 Lotus japonicus clone JCVI-FLLj-5M11 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014500511.1	1e-125	WUSCHEL-related homeobox 13
Swissprot	Q5QMM3	7e-77	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	I3SR23	1e-145	I3SR23_LOTJA; Uncharacterized protein
STRING	XP_007136031.1	1e-124	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1855	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	2e-70	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]