PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v3402230.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family NAC
Protein Properties Length: 240aa    MW: 27865.8 Da    PI: 10.3462
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v3402230.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM99.93.5e-3128054128
              NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +e+ewy Fs rdkky+tg r+nrat +gyWkatgkdkev+s+    ++ l g+kktLvfykgrap+gekt+Wvmheyrl
  Lj1g3v3402230.2   2 GEREWYLFSLRDKKYPTGLRTNRATGAGYWKATGKDKEVYSAssngEKLLLGMKKTLVFYKGRAPRGEKTRWVMHEYRL 80 
                      578**************************************877544455***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100539.6721107IPR003441NAC domain
SuperFamilySSF1019411.19E-362107IPR003441NAC domain
PfamPF023652.9E-14680IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MGEREWYLFS LRDKKYPTGL RTNRATGAGY WKATGKDKEV YSASSNGEKL LLGMKKTLVF  60
YKGRAPRGEK TRWVMHEYRL DGHFSISHHH TTLISKEEWV ICRIFHKSGE KKVQGHLNAD  120
SPSPTKNTTT LPPPLSLAKT PTNSLTLCQS KTSSHHHSFQ NDSDHLFPFQ PACFPYTRXX  180
XXXXXXXXXX XXXXXXXEIT IHLLKYSSRL SYLNRSRSNS QLQNEPKWRL QQYSMINSNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-30110771168NAC domain-containing protein 19
3swm_B4e-30110771168NAC domain-containing protein 19
3swm_C4e-30110771168NAC domain-containing protein 19
3swm_D4e-30110771168NAC domain-containing protein 19
3swp_A4e-30110771168NAC domain-containing protein 19
3swp_B4e-30110771168NAC domain-containing protein 19
3swp_C4e-30110771168NAC domain-containing protein 19
3swp_D4e-30110771168NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00241DAPTransfer from AT1G76420Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v3402230.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007135979.12e-70hypothetical protein PHAVU_009G008000g
TrEMBLV7ATN94e-69V7ATN9_PHAVU; Uncharacterized protein
STRINGXP_007135979.17e-70(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.11e-50NAC family protein