PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v3443990.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 151aa    MW: 16623.5 Da    PI: 6.9459
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v3443990.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157.3e-053052123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C+ C++ Fs+   L  H++ H
  Lj1g3v3443990.1 30 YSCTFCKRGFSNAQALGGHMNIH 52
                     99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.72E-62856No hitNo description
Gene3DG3DSA:3.30.160.609.5E-52855IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.3233057IPR007087Zinc finger, C2H2
PROSITE patternPS0002803252IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051973Biological Processpositive regulation of telomerase activity
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MEFNAQNSSK SQQIGWRSDD LGGPGQVRSY SCTFCKRGFS NAQALGGHMN IHRRDRAKLK  60
QSSEENLLSL DISMKSTEHL DSEENLAPQK GKLVSATTAE HPRNPSYVAK ATGSSVVVQM  120
SSEEEKTDLD LELRLGFEPL GSSILSTRAF F
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15260RRDRAKLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.71320.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v3443990.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0061030.0AP006103.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT11J24, TM0185, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004492174.18e-65transcriptional regulator TAC1-like
TrEMBLA0A1S3DZK52e-63A0A1S3DZK5_CICAR; transcriptional regulator TAC1-like
STRINGXP_004492174.13e-64(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33353162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.17e-18C2H2 family protein