PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v3466090.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family B3
Protein Properties Length: 198aa    MW: 22840.7 Da    PI: 9.0542
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v3466090.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.32e-117613794
                     EEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3 37 tledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                     +l   + r+W+v+l+   ++g++++++GW+ F  +n+Lk gD++ F l+++++   ++
  Lj1g3v3466090.1  7 RLFVNKERTWDVELK-LYSGGQIIFGRGWRTFLCDNNLKLGDVCAFVLNKSNGV--LF 61
                     5556789*******3.4444559************************9764333..45 PP
2B345.51.3e-141151971396
                      TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      +g+ ++p +f++++ ++k +++ +tl+    ++W vk+ y k+ ++  ++ GW eFvk+ gLk+gD++ F ++++++ el v++
  Lj1g3v3466090.1 115 NGQACIPMTFIKKFLSEKDNGRFVTLRV-GRNTWPVKVLYYKYCSSARFSLGWPEFVKECGLKAGDVCHFLMIDKKNLELQVTI 197
                      45567********955555665566554.789***************************************9998999998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.464167IPR003340B3 DNA binding domain
CDDcd100177.39E-10267No hitNo description
SuperFamilySSF1019361.55E-12366IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.2E-12466IPR015300DNA-binding pseudobarrel domain
PfamPF023627.6E-9660IPR003340B3 DNA binding domain
SMARTSM010190.0017106194IPR003340B3 DNA binding domain
SuperFamilySSF1019361.08E-15110195IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-15110195IPR015300DNA-binding pseudobarrel domain
PfamPF023622.1E-12114197IPR003340B3 DNA binding domain
PROSITE profilePS5086310.306120198IPR003340B3 DNA binding domain
CDDcd100172.03E-14120197No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MEGQMARLFV NKERTWDVEL KLYSGGQIIF GRGWRTFLCD NNLKLGDVCA FVLNKSNGVL  60
FQVFIYPLHE YPCHLPFQEG LSQRPSSLKI PDIIKDKSRL MSEDGFDIHI KPSMNGQACI  120
PMTFIKKFLS EKDNGRFVTL RVGRNTWPVK VLYYKYCSSA RFSLGWPEFV KECGLKAGDV  180
CHFLMIDKKN LELQVTIN
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v3466090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14649515
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.11e-11related to vernalization1 1