PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v3466130.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family M-type_MADS
Protein Properties Length: 156aa    MW: 18118.1 Da    PI: 5.1046
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v3466130.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF31.72e-101149341
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                     i ++s r+ tf kR+n i+KK +EL  L++ +++ ii s
  Lj1g3v3466130.1 11 IADHSLRKATFNKRKNDIIKKLKELTFLTGLRACAIISS 49
                     8899********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.283149IPR002100Transcription factor, MADS-box
SMARTSM004324.9E-13160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.19E-17184IPR002100Transcription factor, MADS-box
CDDcd002661.30E-17285No hitNo description
PRINTSPR004044.0E-6323IPR002100Transcription factor, MADS-box
PfamPF003191.3E-91149IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-62338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MTRAKVELAY IADHSLRKAT FNKRKNDIIK KLKELTFLTG LRACAIISSV FNAPPEVWPN  60
TEEAMDVVEK YHDAPALNES DNLHPLSFMM QTISKLQDVL EKKLRRIRED ELTMVMFNYM  120
EDKTLPEDLS FEDCNIINEL VQKKIEEIDL KIAMLS
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v3466130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13237929
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.23e-26M-type_MADS family protein