PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v3476150.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family M-type_MADS
Protein Properties Length: 150aa    MW: 17386.4 Da    PI: 9.412
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v3476150.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.12.7e-141149341
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                     i+++s r+ tf kR++gilKK +EL +L++++++ ii +
  Lj1g3v3476150.1 11 ISDHSSRKATFNKRKKGILKKLKELTILTGIQACAIISG 49
                     99**********************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.133147IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.54E-19181IPR002100Transcription factor, MADS-box
SMARTSM004322.8E-18160IPR002100Transcription factor, MADS-box
CDDcd002663.20E-21274No hitNo description
PRINTSPR004049.2E-9323IPR002100Transcription factor, MADS-box
PfamPF003199.3E-131147IPR002100Transcription factor, MADS-box
PRINTSPR004049.2E-92338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MTRAKVELAY ISDHSSRKAT FNKRKKGILK KLKELTILTG IQACAIISGL FNSPPVVWPN  60
TGEAMHVVEK YQNAPAINES NNLNQMSFMM KIISKFQDVL KKKLRRIREY ELTMVMFNYM  120
EDKTLPEDLS FEDCNIINEL VQKKIEEIDL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11631RKATFNKRKKGILKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v3476150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13237929
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.15e-18AGAMOUS-like 80