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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Lj1g3v3556900.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 161aa MW: 18012.1 Da PI: 3.9241 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 32 | 4e-10 | 117 | 158 | 2 | 44 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreee 44
fY+ YA++ GF rk+k k+ ++g +++++fvC +egkr+e+
Lj1g3v3556900.1 117 FYSWYARMHGFAARKAKVLKN-NHGDVIQQRFVCFREGKRKEK 158
9****************9999.7777**************997 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 2.7E-7 | 117 | 159 | IPR004330 | FAR1 DNA binding domain |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 161 aa Download sequence Send to blast |
MVEGGEVDVH VSVDEEQGAD AEQESGDEQG TDSDEEEGEK EADEEQESGD EQGTDSDEEE 60 GEKEAENGQN EQNVDVEPPS EIAINGLEDL GIVNFKQLSV NDIVTYHFPD REVAYLFYSW 120 YARMHGFAAR KAKVLKNNHG DVIQQRFVCF REGKRKEKAG P |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Lj1g3v3556900.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AP009736 | 1e-138 | AP009736.1 Lotus japonicus genomic DNA, clone: LjT31N04, TM1857, complete sequence. | |||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF3613 | 6 | 39 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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