PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v3560250.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 232aa    MW: 26359.9 Da    PI: 10.0093
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v3560250.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.84e-11109150351
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                       +GV++  k+ +W A I++      +k+++lg+ g+ eeAa ++++a+ 
  Lj1g3v3560250.2 109 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAAHLYDRAAF 150
                      79**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.0E-4108165IPR001471AP2/ERF domain
PfamPF008471.9E-5108151IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-7109153IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.7E-6111159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MVSLRRRRLL GLCSGSSSFV TPLPLYCENL TGSENSNWHA KPKSEQPVLS DDASILDSNT  60
IVQEEPGSSN ISGSSSSKEQ LMQQTPGPPV KRRKRHRRKN LHNQETCLMR GVYFKNMKWQ  120
AAIKVDKKQI HLGTVGSQEE AAHLYDRAAF MCGREPNFEL PEEEKRELHK FKWDEFLAVT  180
RQAITRKKHK RRLSPGPLDN GLELLPLQKD DWESKQGVSG FSACETSISR KS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185192RKKHKRRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.88550.0floral bud| pod
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v3560250.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1483110.0BT148311.1 Lotus japonicus clone JCVI-FLLj-4D9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020203925.11e-117ethylene-responsive transcription factor-like protein At4g13040 isoform X2
TrEMBLA0A0U1W0K31e-169A0A0U1W0K3_LOTCO; AP2/ERF
STRINGGLYMA08G46250.41e-115(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.14e-46ERF family protein