PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v3690290.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family B3
Protein Properties Length: 333aa    MW: 38731.6 Da    PI: 10.2949
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v3690290.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.63.1e-2021111198
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      ffk+  +s++l +g l++p+ f+e+++  +  +kt+ l+ ++g+ W+++l   k +g ++++kGWkeF++ + L  g  +vFk++++s f   v
  Lj1g3v3690290.1  21 FFKII-SSHSLHEGKLMIPRAFVEKYE--EGLPKTMFLKPPNGKDWKLNL--VKLDGNMWFQKGWKEFAEHHSLAHGHLLVFKYQRTSHF--QV 107
                      66666.899999999***********7..45889****************..999999**************************998999..99 PP

                      EEE- CS
               B3  95 kvfr 98 
                      ++f+
  Lj1g3v3690290.1 108 QIFD 111
                      9997 PP
2B365.39e-21219318299
                      EEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-.TTHHHHHHHHT--TT-EEEEEE-SSSE CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr..yvlt.kGWkeFvkangLkegDfvvFkldgrse 89 
                      f ++++++++  ++l++p kf ++h   g ++ +  +++l+ ++gr W  ++i+r +++r  + l+ +GWk F k+n+Lk+gD++vF+l++ ++
  Lj1g3v3690290.1 219 FMAFMHPSYFY-CNLSIPAKFGKKHldlG-QNVG--DIQLRVLNGRFWPARYIIRENGERkrFDLSySGWKAFSKDNKLKVGDVCVFELIHGTK 308
                      55666666665.55************753.3334..7***************996666654455557***********************99** PP

                      E..EEEEE-S CS
               B3  90 felvvkvfrk 99 
                       +++v++fr+
  Lj1g3v3690290.1 309 LTFLVHIFRE 318
                      ********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-2517113IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.44E-2418120IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.93120113IPR003340B3 DNA binding domain
CDDcd100171.86E-1920111No hitNo description
PfamPF023621.4E-1721111IPR003340B3 DNA binding domain
SMARTSM010193.3E-1821113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.5E-23211319IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.43E-22212319IPR015300DNA-binding pseudobarrel domain
CDDcd100171.20E-22217317No hitNo description
PfamPF023622.4E-19218318IPR003340B3 DNA binding domain
SMARTSM010191.7E-16218319IPR003340B3 DNA binding domain
PROSITE profilePS5086311.843232319IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MIQPMAGKFP HQPQLKKPTH FFKIISSHSL HEGKLMIPRA FVEKYEEGLP KTMFLKPPNG  60
KDWKLNLVKL DGNMWFQKGW KEFAEHHSLA HGHLLVFKYQ RTSHFQVQIF DMSALEINYN  120
FKRVEGKRAS NSEGNKPPND ESSEDYRAGQ KRKANLAFDF FQPCKLETGR DDKVRNDLKF  180
QKVALDHTNK KCKGKQILTA KQATALDRAN SFKTCKPFFM AFMHPSYFYC NLSIPAKFGK  240
KHLDLGQNVG DIQLRVLNGR FWPARYIIRE NGERKRFDLS YSGWKAFSKD NKLKVGDVCV  300
FELIHGTKLT FLVHIFRESE NSNCPTSQEY SNK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v3690290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0102680.0AP010268.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT28C03, TM1818, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003551329.11e-128B3 domain-containing transcription factor VRN1 isoform X1
RefseqXP_020206625.11e-128B3 domain-containing transcription factor VRN1
RefseqXP_028213212.11e-128B3 domain-containing transcription factor VRN1-like isoform X1
TrEMBLA0A371G9G91e-129A0A371G9G9_MUCPR; B3 domain-containing transcription factor VRN1 (Fragment)
STRINGGLYMA18G30790.11e-128(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-38B3 family protein