PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v3847150.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family SBP
Protein Properties Length: 187aa    MW: 21096.7 Da    PI: 8.1551
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v3847150.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1344.8e-4282156276
                      -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
              SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                      C v+gC++dls+++eyhrrh+vCe+hsk+pvvlv g++qrfCqqCsrfh+l efD+ krsCr+rL++hn+rrrk+
  Lj1g3v3847150.2  82 CSVDGCTSDLSDCREYHRRHRVCEKHSKTPVVLVGGKQQRFCQQCSRFHSLGEFDDVKRSCRKRLDGHNRRRRKP 156
                      *************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.0E-3377143IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.7179156IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.79E-3980160IPR004333Transcription factor, SBP-box
PfamPF031102.1E-3182155IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MDWDWKEFAW DPSGLELAIG GLEGQKNEEA TVDLRLGEGS DSVEKSAPDT PKDPEESKAM  60
SSSPSGSSKR SRLHNGSLNM ACSVDGCTSD LSDCREYHRR HRVCEKHSKT PVVLVGGKQQ  120
RFCQQCSRFH SLGEFDDVKR SCRKRLDGHN RRRRKPPPPS LFMAAEKFMY NYKGLCVASL  180
DSMNFFC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-28821551184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138155KRSCRKRLDGHNRRRRKP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.14420.0cell culture| floral bud| flower| pod| protoplast
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v3847150.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1448680.0BT144868.1 Lotus japonicus clone JCVI-FLLj-19G4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027350570.12e-96teosinte glume architecture 1-like isoform X1
RefseqXP_027350571.12e-96teosinte glume architecture 1-like isoform X1
RefseqXP_027350572.12e-96teosinte glume architecture 1-like isoform X1
RefseqXP_027350573.12e-96teosinte glume architecture 1-like isoform X1
RefseqXP_027350574.12e-96teosinte glume architecture 1-like isoform X2
TrEMBLI3SWM01e-125I3SWM0_LOTJA; Uncharacterized protein
STRINGXP_007161706.12e-88(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.16e-40SBP family protein