PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v3892240.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family NAC
Protein Properties Length: 222aa    MW: 25298.7 Da    PI: 9.9419
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v3892240.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM95.58.2e-3091381129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                      lp+G+rF+Ptd+ lv+ yLk+k+ +++l++ +v++e+d+++vePw+Lpk   k    +++++++F +r +    +++  r++ +g W+ + k k
  Lj1g3v3892240.1   9 LPVGYRFDPTDDVLVDAYLKRKIFSQPLPV-DVVPELDVFQVEPWRLPKgdeK--IfTDRQYFWFNTRGRDL--ESQDWRVAGNGQWRMSKKGK 97 
                      799***************************.99***************53322..22556777777777765..57999*99*****9666666 PP

              NAM  91 evlsk.kgelvglkktLvfykg.rapkgektdWvmheyrle 129
                      +v    +++l+g k+tL+f+k+  a  +++t+Wvmhe+rle
  Lj1g3v3892240.1  98 DVPIPgDNQLIGKKNTLIFWKEqGAAAAKETKWVMHEFRLE 138
                      6655548899**********6536777899********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.72E-336157IPR003441NAC domain
PROSITE profilePS5100536.2159157IPR003441NAC domain
PfamPF023656.8E-1710137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MENHLNPRLP VGYRFDPTDD VLVDAYLKRK IFSQPLPVDV VPELDVFQVE PWRLPKGDEK  60
IFTDRQYFWF NTRGRDLESQ DWRVAGNGQW RMSKKGKDVP IPGDNQLIGK KNTLIFWKEQ  120
GAAAAKETKW VMHEFRLEII ASPTRMSHLA MYRIFQKKGV KKVRHGPHRR GGRNAAIGGM  180
NSGSTADVID LNEESGSFSG PPPMTPSLSE GSDSGENYIR SW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-24215810169Stress-induced transcription factor NAC1
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v3892240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0096341e-146AP009634.1 Lotus japonicus genomic DNA, clone: LjB16I02, BM1852, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027352865.12e-58NAC domain-containing protein 83-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF134131127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.16e-21NAC family protein