PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v3930420.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 289aa    MW: 31930.2 Da    PI: 4.7825
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v3930420.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.8e-193281255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +y GVr+++ +gr++AeIrdps+   + r++lg+f+taeeAa a+++a+++++g
  Lj1g3v3930420.1 32 RYLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMRG 81
                     588******.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.12E-213289IPR016177DNA-binding domain
SMARTSM003802.7E-343295IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-293288IPR001471AP2/ERF domain
PROSITE profilePS5103221.143289IPR001471AP2/ERF domain
CDDcd000182.70E-313288No hitNo description
PfamPF008473.4E-123381IPR001471AP2/ERF domain
PRINTSPR003671.2E-83344IPR001471AP2/ERF domain
PRINTSPR003671.2E-85571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MSPPHTTPSK GKKKTETTPQ QSQEQQTTWG GRYLGVRRRP WGRYAAEIRD PSTKERHWLG  60
TFDTAEEAAL AYDRAARSMR GSRARTNFVY TDTPPGSSVT PILSPDQQQQ VVDHTFHDLS  120
SFLTQNNHPG SVQPDPVPAL DPVMLLAGGY GGYGEGTNFV TAAATVEGNY NSNNNNSNHY  180
FMNQQQVFFD DGCNAAAGST SGEIELPPLP PDITSSCYDS SNNDNGCYYW EQNAGGYDQY  240
LHNVAGLENV VALLLLLLLL HFSSDEALSL SMLFYVNSLV AFWVFYFCV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-213088362ATERF1
3gcc_A1e-213088362ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v3930420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004493337.12e-73ethylene-responsive transcription factor LEP
TrEMBLA0A1S2XRD74e-72A0A1S2XRD7_CICAR; ethylene-responsive transcription factor LEP
TrEMBLA0A2Z6PBX76e-72A0A2Z6PBX7_TRISU; Uncharacterized protein
STRINGXP_004493337.17e-73(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39043161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.17e-27ERF family protein