PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj1g3v3991510.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

Dof

Protein Properties

Length: 469aa MW: 51120 Da PI: 6.8608

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj1g3v3991510.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.4	1.5e-38	101	160	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+++cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GG++r vPvG+grrknk+ Lj1g3v3991510.1 101 PDKIVQCPRCNSMDTKFCYFNNYNVNQPRHFCKSCQRYWTAGGTMRSVPVGAGRRKNKQL 160 7899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-31	89	158	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.5E-32	103	159	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.053	105	159	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	107	143	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence Send to blast
MSETNKDSGI KLFGRKILVS PECQIPANSG HTDAFSSTKK TQVETPCAEY SKQQENPSDS 60 RDIKEDSEHN VKENKPIVNS NPVEDNMDTD NAEQDKILKK PDKIVQCPRC NSMDTKFCYF 120 NNYNVNQPRH FCKSCQRYWT AGGTMRSVPV GAGRRKNKQL ASQFRHIIVN SEGIPTSRLE 180 TTGSYGYQQH MSSDFRPSTE NGTVLKFGPN APLYESMESM LNLREQKRIA DSNSSSCVEY 240 GEEPSTCVSS VTNSATQGNE FSENNTSNLL QYHPVPPWVL PWNPGWNNVA SLGVIHQSSS 300 PMCNPAMQWC PAPMVAIPGT CPTSIPLQHV PASYLGGTPL YAAGTGTLST GSNACVSPSS 360 STTTSSCSGN GSPILGKHTR DITVFTDDER SENCVLAPKA IRICDPNEAS KSSLWTTLSI 420 KPDKLHQSLS DGGCLRKIEP KGDGEDRVLG ASQILEANPA AISRAHAFQ

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence Send to blast

MSETNKDSGI KLFGRKILVS PECQIPANSG HTDAFSSTKK TQVETPCAEY SKQQENPSDS  60
RDIKEDSEHN VKENKPIVNS NPVEDNMDTD NAEQDKILKK PDKIVQCPRC NSMDTKFCYF  120
NNYNVNQPRH FCKSCQRYWT AGGTMRSVPV GAGRRKNKQL ASQFRHIIVN SEGIPTSRLE  180
TTGSYGYQQH MSSDFRPSTE NGTVLKFGPN APLYESMESM LNLREQKRIA DSNSSSCVEY  240
GEEPSTCVSS VTNSATQGNE FSENNTSNLL QYHPVPPWVL PWNPGWNNVA SLGVIHQSSS  300
PMCNPAMQWC PAPMVAIPGT CPTSIPLQHV PASYLGGTPL YAAGTGTLST GSNACVSPSS  360
STTTSSCSGN GSPILGKHTR DITVFTDDER SENCVLAPKA IRICDPNEAS KSSLWTTLSI  420
KPDKLHQSLS DGGCLRKIEP KGDGEDRVLG ASQILEANPA AISRAHAFQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.13987	0.0	cell culture

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj1g3v3991510.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT142815	0.0	BT142815.1 Lotus japonicus clone JCVI-FLLj-22L9 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028219177.1	0.0	cyclic dof factor 1-like
TrEMBL	I3SQR7	0.0	I3SQR7_LOTJA; Uncharacterized protein
STRING	GLYMA19G29610.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3502	31	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	3e-55	cycling DOF factor 2