PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v4107000.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 242aa    MW: 27058.5 Da    PI: 7.9955
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v4107000.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.32.7e-1373119354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r+h+e+E+rRR+riNs ++ Lr+llP +      K +Ka+ L k+v+ +k+L
  Lj1g3v4107000.1  73 RNHKEAEKRRRERINSHLDALRTLLPCN-----SKTDKASLLAKVVQRVKEL 119
                      58*************************8.....7************999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.87870119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-1473128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.18E-1273122No hitNo description
PfamPF000106.3E-1173119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-1374128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-1276125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.6E-4157210No hitNo description
CDDcd048730.00689157221No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MLQQHQIGNM ENSSELFQFL TGTNNNASFF EAQPPSVQNS FCSSSNNNYY PLEVSEITEA  60
APSQQDRNLA AMRNHKEAEK RRRERINSHL DALRTLLPCN SKTDKASLLA KVVQRVKELK  120
QQTSEITNLE TVPSETDEIS VLSSGGAGDG RLIFKASLCC EDRSDLIPDL IEILKSLHLK  180
TLKAEMATLG GRTRNVLIVA AEKDHSIESI HFLQNSLRSL LDRSSSGDRS KRRRGLDRTM  240
MA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.140760.0protoplast| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v4107000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0105140.0AP010514.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT06H19, TM1804, complete sequence.
GenBankAP0105150.0AP010515.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT02K21, TM1807, complete sequence.
GenBankFJ3797650.0FJ379765.1 Lotus japonicus putative basic helix-loop-helix protein BHLH24 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024625604.11e-130transcription factor bHLH106
SwissprotO806744e-77BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A396H4N21e-130A0A396H4N2_MEDTR; Putative transcription factor bHLH family
STRINGAES811731e-128(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66723249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.11e-73bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]