PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj1g3v4302180.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

bHLH

Protein Properties

Length: 87aa MW: 10090.7 Da PI: 10.6091

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj1g3v4302180.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.5	1e-12	27	72	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P++ +k s ae+L +A YI++Lq Lj1g3v4302180.1 27 SIAERVRRTRISERIRKLQELVPNL----DKQTSTAEMLDLAAVYINDLQ 72 689*******************9....788***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.373	21	71	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.32E-16	23	84	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.05E-8	25	74	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.4E-14	26	84	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-9	27	72	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.7E-10	27	77	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 87 aa Download sequence Send to blast
MDNLLEFTDS VPTNVRAKRG FATHPRSIAE RVRRTRISER IRKLQELVPN LDKQTSTAEM 60 LDLAAVYIND LQKQFKTLSE KRAKCKC

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.104	1e-125	root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj1g3v4302180.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014492120.1	7e-46	transcription factor bHLH130-like
Refseq	XP_020213881.1	8e-46	transcription factor bHLH130
Swissprot	Q66GR3	5e-37	BH130_ARATH; Transcription factor bHLH130
TrEMBL	A0A4D6M882	6e-46	A0A4D6M882_VIGUN; Phytochrome-interacting factor 3
STRING	XP_004493549.1	3e-44	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9132	30	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	4e-30	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]