PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj1g3v4447050.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

C2H2

Protein Properties

Length: 257aa MW: 29126.2 Da PI: 10.0232

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj1g3v4447050.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.7	4.1e-05	76	98	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C k F r nL+ H r H Lj1g3v4447050.1 76 FVCEICLKGFQRDQNLQLHRRGH 98 89*******************88 PP
2	zf-C2H2	13.3	0.00024	152	174	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ Lj1g3v4447050.1 152 WKCEKCSKIYAVQSDWKAHSKTC 174 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	8.3E-5	75	98	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.92E-6	75	98	No hit	No description
PROSITE profile	PS50157	10.305	76	98	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.21	76	98	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	78	98	IPR007087	Zinc finger, C2H2
SMART	SM00355	170	117	147	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.0E-4	140	173	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.92E-6	147	172	No hit	No description
SMART	SM00355	170	152	172	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MFTTTITNST SMSEGATVSS GTRVQYLSGL NQVVSTISDP QQPRKIKKKR SLPGNPDPDA 60 EIIALSPKAL LATNRFVCEI CLKGFQRDQN LQLHRRGHNL PWKLKQRSSK EVKKKAYVCP 120 EPSCVHHNPS RALGDLTGIK KHYCRKHGEK KWKCEKCSKI YAVQSDWKAH SKTCGTKEYR 180 CDCGTLFSRK DSFITHRAFC DALAEESAKL STNQLTTTST NPLLHSLILF QTQQNLQQNH 240 HFTTSFSPWY MDSQPPQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-36	148	212	3	67	Zinc finger protein JACKDAW
5b3h_F	2e-36	148	212	3	67	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj1g3v4447050.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP006429	0.0	AP006429.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT17D07, TM0322, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027350957.1	1e-152	protein indeterminate-domain 12-like
Swissprot	O22759	1e-113	IDD12_ARATH; Protein indeterminate-domain 12
TrEMBL	A0A371FKQ0	1e-150	A0A371FKQ0_MUCPR; Protein indeterminate-domain 12
STRING	XP_007144666.1	1e-144	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF181	34	275

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	1e-113	indeterminate(ID)-domain 12

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]