PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v4467980.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 132aa    MW: 14979.1 Da    PI: 10.6238
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v4467980.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2651.6e-201261255
              AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +++GVr ++ +gr++AeIrd ++    ++r +lg+f+taeeAa+a+++a++ l+g
  Lj1g3v4467980.1 12 HFRGVRKRP-WGRFAAEIRDpWK----KTRKWLGTFDTAEEAARAYDHAARTLRG 61
                     69*******.**********883....5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.3E-311269IPR001471AP2/ERF domain
SMARTSM003801.4E-331275IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-221270IPR016177DNA-binding domain
PROSITE profilePS5103222.3521269IPR001471AP2/ERF domain
PfamPF008478.1E-131261IPR001471AP2/ERF domain
CDDcd000181.27E-271268No hitNo description
PRINTSPR003671.4E-101324IPR001471AP2/ERF domain
PRINTSPR003671.4E-103551IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MSPSPSSMES HHFRGVRKRP WGRFAAEIRD PWKKTRKWLG TFDTAEEAAR AYDHAARTLR  60
GPKAKTNFSY DSGGFFPPHP VKFWGPPAFF AGVPVRSEYQ GYKLETIAGA VVNKEEKKKP  120
FLFDLNLPAP LL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-191268562ATERF1
3gcc_A2e-191268562ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v4467980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-49AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027922867.11e-59ethylene-responsive transcription factor ESR1-like
TrEMBLA0A4D6MCB02e-58A0A4D6MCB0_VIGUN; EREBP-like factor
STRINGXP_007162505.11e-58(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.11e-21ethylene responsive element binding factor 3