PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v4467990.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family FAR1
Protein Properties Length: 134aa    MW: 15278 Da    PI: 4.5172
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v4467990.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR140.31.1e-1272133162
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgC 62 
                      +fY++YAk  GF  rk+  ++  ++g++++r++vC+++g+r++++ k  ++ r+ ++ tr++C
  Lj1g3v4467990.1  72 DFYERYAKCSGFVSRKDDVYRD-EDGNVVTRQLVCNRQGQRDQKHFKkIDRVRKAKPITRISC 133
                      6*******************98.8888**************9998774678889999****99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.9E-1172133IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MAKLVEGDCV NLCDDEDINN VELNDISCEG VYGDKDKDGK TDNEGEGVKP IMMLTAEEIR  60
DLEFSSEAEA CDFYERYAKC SGFVSRKDDV YRDEDGNVVT RQLVCNRQGQ RDQKHFKKID  120
RVRKAKPITR ISCP
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v4467990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029126074.15e-25protein FAR1-RELATED SEQUENCE 5-like
TrEMBLI3S3C67e-35I3S3C6_LOTJA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9653634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.12e-10FAR1 family protein