PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v4483600.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 195aa    MW: 22186.8 Da    PI: 9.0553
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v4483600.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.70.0001122591355
                     HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                     R+ i +++  Lrel+P+ a      K s  + Le+A++++  Lq
  Lj1g3v4483600.1 22 RQLIQDRIKDLRELVPNgA------KCSIDSLLERAIKHMLFLQ 59
                     67799************77......777778*********9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.493958IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.1E-52265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.01E-52264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MSRFSKKRAR PGESCRPRPR DRQLIQDRIK DLRELVPNGA KCSIDSLLER AIKHMLFLQS  60
VTKHADKLTK FDDTKSKLHR METDVIGTST YEQGSSWAME VGGPLKVHSI LVENLSKDGQ  120
MIVEMLCEEC SHFLEIADVI RSLGLTVLKG ATKAHDEKIL LCFVVEGQNN RNVHRLDILW  180
PLVQILQSKS TMHAQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.49860.0cell culture| floral bud| pod| root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may regulate root development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v4483600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1432251e-170BT143225.1 Lotus japonicus clone JCVI-FLLj-10E5 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022634828.11e-120transcription factor bHLH155 isoform X2
SwissprotP0C7P83e-86LHWL1_ARATH; Transcription factor EMB1444
TrEMBLA0A3Q0ESV71e-119A0A3Q0ESV7_VIGRR; transcription factor bHLH155 isoform X2
STRINGXP_007162528.11e-117(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.16e-78conserved peptide upstream open reading frame 7