PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v4565010.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 175aa    MW: 19793.7 Da    PI: 9.7219
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v4565010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.60.00183860123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ C++ Fs+   L  H  +H
  Lj1g3v4565010.1 38 FECKTCNRKFSSFQALGGHRASH 60
                     89**********99999998886 PP
2zf-C2H211.90.0006885107123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ Cg  Fs    L  H+r+H
  Lj1g3v4565010.1  85 HVCSVCGLGFSLGQALGGHMRKH 107
                      79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512577125No hitNo description
PROSITE profilePS5015710.5543865IPR007087Zinc finger, C2H2
SMARTSM003550.193860IPR015880Zinc finger, C2H2-like
PfamPF139129.3E-103860IPR007087Zinc finger, C2H2
SuperFamilySSF576678.77E-838107No hitNo description
PROSITE patternPS0002804062IPR007087Zinc finger, C2H2
SMARTSM003550.385107IPR015880Zinc finger, C2H2-like
PfamPF139123.6E-885108IPR007087Zinc finger, C2H2
PROSITE profilePS501579.49485112IPR007087Zinc finger, C2H2
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MKRQRDNEGT ESFDLTNCLM LMLSCPKQKR TINESVEFEC KTCNRKFSSF QALGGHRASH  60
NHKRVKLEEQ AKTPSLWDNN KPRMHVCSVC GLGFSLGQAL GGHMRKHRNN EGFSSSSSSS  120
SSYSIKEEVA KFPVLKRLNS SKRVLCLDLD LNFPPMENDF MFGMKSPSPV PLSLF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.78660.0floral bud| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v4565010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1467080.0BT146708.1 Lotus japonicus clone JCVI-FLLj-8I13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004493902.17e-64zinc finger protein ZAT11-like
TrEMBLI3T1W01e-124I3T1W0_LOTJA; Uncharacterized protein
STRINGXP_004493902.13e-63(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.12e-36C2H2 family protein