PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v4578960.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family AP2
Protein Properties Length: 264aa    MW: 29811 Da    PI: 7.271
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v4578960.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.5e-17123172155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Lj1g3v4578960.1 123 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 172
                      78*******************......55************************997 PP
2AP227.95.8e-09215254144
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAak 44 
                      s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+
  Lj1g3v4578960.1 215 SRYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSELEAAR 254
                      79********.7******5553..2.26**********999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.03E-16123182IPR016177DNA-binding domain
PfamPF008472.3E-9123172IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-17124181IPR001471AP2/ERF domain
SMARTSM003805.3E-33124186IPR001471AP2/ERF domain
CDDcd000186.24E-12124182No hitNo description
PROSITE profilePS5103217.794124180IPR001471AP2/ERF domain
CDDcd000181.07E-12215254No hitNo description
SuperFamilySSF541711.5E-8215254IPR016177DNA-binding domain
PfamPF008476.6E-5215254IPR001471AP2/ERF domain
PROSITE profilePS510329.914216264IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-5216254IPR001471AP2/ERF domain
SMARTSM003806.6E-7216262IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MLDLNLNAAD SVHMESSGSF DSSVVNAADT EDSSSFGEAY AYNFAILNTS TAVDEPTTTS  60
AAVHLPYAGD HSVRTIEFFP TTESQRWSDF LPDHPGAVPE QTIVAPRPQQ VKKSRRGPRS  120
RSSQYRGVTF YRRTGRWESH IWDCGKQVYL GGFDTAHAAA RAYDRAAIKF RGVDADINFN  180
VSDYDEDIKQ MSNFTKEEFV HILRRQSTGF SRGSSRYRGV TLHKCGRWEA RMGQFLGKKY  240
IYLGLFDSEL EAARFTNSIS EYFK
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in developing branch and spikelet meristems at very early stages of inflorescence formation, and is maintained uniformly in the spikelet meristems until floral organs initiation. Present in some floral organ primordia. {ECO:0000269|PubMed:22003982}.
UniprotTISSUE SPECIFICITY: Highly expressed in developing panicles and in young seedlings (PubMed:20017947, PubMed:22003982). Present at low levels at all developmental stages (PubMed:22003982). {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v4578960.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0102910.0AP010291.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT58D09, TM2058, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004493938.11e-129ethylene-responsive transcription factor RAP2-7-like
SwissprotB8AMA92e-86AP22_ORYSI; APETALA2-like protein 2
SwissprotQ84TB52e-86AP22_ORYSJ; APETALA2-like protein 2
TrEMBLA0A1S2XSQ61e-128A0A1S2XSQ6_CICAR; ethylene-responsive transcription factor RAP2-7-like
STRINGXP_004493938.11e-129(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.39e-87related to AP2.7
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]