PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj1g3v4579260.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

S1Fa-like

Protein Properties

Length: 73aa MW: 7995.4 Da PI: 10.1431

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj1g3v4579260.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	99.1	2.8e-31	24	73	5	54
S1FA 5 kveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskk 54 ++GlnPGlivllvv+glll+flvgny+ly+yaqk+lPPrkkkP+skk Lj1g3v4579260.1 24 DSGSQGLNPGLIVLLVVAGLLLTFLVGNYVLYTYAQKTLPPRKKKPISKK 73 45679********************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04689	1.2E-28	26	73	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 73 aa Download sequence Send to blast
MADDFEFSDK VPPSFDRVGN VVKDSGSQGL NPGLIVLLVV AGLLLTFLVG NYVLYTYAQK 60 TLPPRKKKPI SKK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.11299	1e-122	cell culture\| pod
Lja.1489	1e-122	cell culture\| floral bud\| pod\| protoplast\| root

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj1g3v4579260.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP010292	2e-87	AP010292.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjB05O03, BM1994, complete sequence.
GenBank	AP010293	2e-87	AP010293.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjB07N04, BM1879, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002323459.1	6e-26	DNA-binding protein S1FA
Swissprot	Q7XLX6	3e-13	S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBL	A9P8W5	1e-24	A9P8W5_POPTR; S1Fa-like family protein
STRING	POPTR_0016s08890.1	2e-25	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5409	33	55

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]