PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v4693080.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family Trihelix
Protein Properties Length: 467aa    MW: 53045.8 Da    PI: 6.7018
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v4693080.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix76.63.9e-24125227186
         trihelix   1 rWtkqevlaLiearremeerlrrgk................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsesss 77 
                      +Wt+ +v++Li a+ +++++ + g+                +kk++W++vs++m+e+g+ +sp+qC++k+++lnkryk+++++ +k+ ++++++
  Lj1g3v4693080.1 125 KWTDTMVRLLIMAVYYIGDEAGGGSeggsdpagkkkatgllQKKGKWKSVSRAMMEKGYYVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVE 218
                      7**************99999998766778889999999**9**********************************************559**** PP

         trihelix  78 tcpyfdqle 86 
                      + +++d ++
  Lj1g3v4693080.1 219 NQSLLDTMD 227
                      *****9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.0E-21123252No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MMEPNGLGGG IFPTISSSGL LGVENQNPLN QQNHHQNPLP LHHHSQMLSY ATTHHDNTDT  60
HIQQPIKHGY PYSAKTNNNN SNGTNNNSNN KAQSNINLSD EDEFAADDNS SADPKRKNSP  120
WHRMKWTDTM VRLLIMAVYY IGDEAGGGSE GGSDPAGKKK ATGLLQKKGK WKSVSRAMME  180
KGYYVSPQQC EDKFNDLNKR YKRVNDILGK GTACRVVENQ SLLDTMDLSP KMKEEARKLL  240
NSKHLFFREM CAYHNSCGHG TNNNAGGTSS NGQTEAGTES LPQQQQQHKC LHNGVGSLRM  300
LKEKSGELEE EEEEIEDDEW EDSSSEEEGE SGSKGQAEED ENWNNDVVRK RARKSGVMPS  360
QVMQQLSSEV SGVLQDGGKS AWEKKQWMKK RMVQLDEQQV SYRAEAFELE KQRLKWARFS  420
SKKEREMERH KLENERSRLE IERMILLLRH KELELMNIQQ QQQHSST
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.103550.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v4693080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027353308.10.0uncharacterized protein LOC113863792
TrEMBLA0A1S3TPF90.0A0A1S3TPF9_VIGRR; uncharacterized protein LOC106757480
STRINGXP_007162836.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48203457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.11e-89sequence-specific DNA binding transcription factors