PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj1g3v4752710.2

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

NF-YA

Protein Properties

Length: 178aa MW: 19376.8 Da PI: 10.6916

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj1g3v4752710.2	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	97.9	1e-30	11	66	2	58
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 p+YVNaKQy++I++RRq+Rak+ ++k+ +k rkpylheSRh hAlrRpRg+gGrF Lj1g3v4752710.2 11 GPIYVNAKQYHGIIRRRQSRAKAVLDRKM-TKRRKPYLHESRHLHALRRPRGCGGRF 66 69************************9.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.5E-34	8	69	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	35.654	9	69	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.3E-26	12	66	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.3E-23	12	34	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.3E-23	43	66	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MLPLNLTTDE GPIYVNAKQY HGIIRRRQSR AKAVLDRKMT KRRKPYLHES RHLHALRRPR 60 GCGGRFLNTK VSANGNGKTG RDVKKTGGEQ LQSSGSQGSD VFQSEVGTLN SSKETNGSSP 120 NVSGLEVTSM YSRGGFDTFS FNHLGSSVYP LADMVDCGRG IMPTKWVAAG GNSCNLNT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-18	10	70	2	62	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	24	43	RRRQSRAKAVLDRKMTKRRK
2	24	44	RRRQSRAKAVLDRKMTKRRKP
3	25	44	RRQSRAKAVLDRKMTKRRKP

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.17443	0.0	root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269\|PubMed:11250072, ECO:0000269\|PubMed:9662544}.

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj1g3v4752710.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB378628	0.0	AB378628.1 Lotus japonicus CBF-A22 mRNA for transcription factor CCAAT, complete cds.
GenBank	BT137657	0.0	BT137657.1 Lotus japonicus clone JCVI-FLLj-2D9 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004494259.1	2e-97	nuclear transcription factor Y subunit A-10-like
Refseq	XP_027188900.1	2e-97	nuclear transcription factor Y subunit A-10-like
Swissprot	Q9M9X4	1e-41	NFYA2_ARATH; Nuclear transcription factor Y subunit A-2
TrEMBL	I3SB10	1e-127	I3SB10_LOTJA; Uncharacterized protein
STRING	XP_004494259.1	6e-97	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G05690.1	2e-39	nuclear factor Y, subunit A2

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Nasim Z,Fahim M,Ahn JH Possible Role of MADS AFFECTING FLOWERING 3 and B-BOX DOMAIN PROTEIN 19 in Flowering Time Regulation of Arabidopsis Mutants with Defects in Nonsense-Mediated mRNA Decay. Front Plant Sci, 2017. 8: p. 191 [PMID:28261246] Zhang M,Hu X,Zhu M,Xu M,Wang L Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis. Sci Rep, 2017. 7(1): p. 1395 [PMID:28469131]