PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v4764520.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ARF
Protein Properties Length: 602aa    MW: 67615.9 Da    PI: 6.9289
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v4764520.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.55.9e-2482183199
                      EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                      f k+ltpsd++++g +++pk+ a+e+       +++++ ++l+ +d++g +W +++i+r++++r+++t+GW+ Fv++++L +gD+++F   + +
  Lj1g3v4764520.1  82 FSKILTPSDTSTHGGFSIPKRLADECfrpldmTHQPPT-QELVAKDLHGFEWHFRHIFRGQPKRHLITSGWSTFVNSKKLVAGDSCIFV--SGD 172
                      88****************************98444444.59************************************************..348 PP

                      EE..EEEEE-S CS
               B3  89 efelvvkvfrk 99 
                      ++e +++++r+
  Lj1g3v4764520.1 173 NGEIRIGFRRA 183
                      88899999885 PP
2Auxin_resp83.74e-28210291183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      a+ha++t+s F+v+Y+P++ + eF+ +v++++k++++ +++G+R++m fe +++++r+ +Gt++g +d+d+++Wp+S+Wr+Lk
  Lj1g3v4764520.1 210 ASHAIATGSLFTVYYHPWTYPFEFITPVKNYMKSTETDYAIGTRVQMVFEAKECARRN-AGTIIGNEDIDNIKWPGSEWRCLK 291
                      789****************************************************999.9*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.4E-3576213IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.0E-3776192IPR015300DNA-binding pseudobarrel domain
CDDcd100172.29E-2180182No hitNo description
PROSITE profilePS5086312.92982184IPR003340B3 DNA binding domain
SMARTSM010192.0E-2282184IPR003340B3 DNA binding domain
PfamPF023627.2E-2282183IPR003340B3 DNA binding domain
PfamPF065073.9E-26210291IPR010525Auxin response factor
PROSITE profilePS5174517.961503585IPR000270PB1 domain
SuperFamilySSF542773.34E-8507579No hitNo description
PfamPF023092.2E-5544582IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MSLNWEVAAF TQHQQDGHME IPVYDLPSKI LCRVICVHLK AEDYTDEVFA QVTLLPELMQ  60
DELNSEDGGT CHIPCRTKTH SFSKILTPSD TSTHGGFSIP KRLADECFRP LDMTHQPPTQ  120
ELVAKDLHGF EWHFRHIFRG QPKRHLITSG WSTFVNSKKL VAGDSCIFVS GDNGEIRIGF  180
RRAMKQHSYA STSSSLISGH SMQLGILASA SHAIATGSLF TVYYHPWTYP FEFITPVKNY  240
MKSTETDYAI GTRVQMVFEA KECARRNAGT IIGNEDIDNI KWPGSEWRCL KVKWDAMPIL  300
DTYRHPERVC PWWIEPLDSI KKKRAPMLSL ANKRCVLNLP QNSVKSASQR VDRDLQGQDY  360
NGVHSLQPLQ SPPSTDLLLS LKITNFRTEK PNQLPFLMQE PLHQSLGSSM SFPHEDISTS  420
CSNVNSTGSE SQGWPSSESK DENDVPFSLP GSCGKYKLFG VSLLDRQPEL PSQQFAIFSK  480
ISSPPMCVTS RKTWKKCRSV NSRSCTKVLK LGTALGRAVD LTCFPGYDEL ISELDQMFDF  540
GGSLINGSSG WHVTCIDDDG DMMLLGDYPW QDFQSMVQKM IICPRDGMKN FNPSSSAEPT  600
SL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1061631946357Auxin response factor 1
4ldw_A1e-1061631946357Auxin response factor 1
4ldw_B1e-1061631946357Auxin response factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v4764520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017417210.10.0PREDICTED: auxin response factor 23-like
RefseqXP_017417211.10.0PREDICTED: auxin response factor 23-like
TrEMBLA0A0S3S0L20.0A0A0S3S0L2_PHAAN; Auxin response factor
STRINGGLYMA19G39340.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.31e-118auxin response factor 2