PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v4764520.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ARF
Protein Properties Length: 657aa    MW: 73926 Da    PI: 7.1619
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v4764520.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.46.8e-24137238199
                      EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                      f k+ltpsd++++g +++pk+ a+e+       +++++ ++l+ +d++g +W +++i+r++++r+++t+GW+ Fv++++L +gD+++F   + +
  Lj1g3v4764520.2 137 FSKILTPSDTSTHGGFSIPKRLADECfrpldmTHQPPT-QELVAKDLHGFEWHFRHIFRGQPKRHLITSGWSTFVNSKKLVAGDSCIFV--SGD 227
                      88****************************98444444.59************************************************..348 PP

                      EE..EEEEE-S CS
               B3  89 efelvvkvfrk 99 
                      ++e +++++r+
  Lj1g3v4764520.2 228 NGEIRIGFRRA 238
                      88899999885 PP
2Auxin_resp83.54.5e-28265346183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      a+ha++t+s F+v+Y+P++ + eF+ +v++++k++++ +++G+R++m fe +++++r+ +Gt++g +d+d+++Wp+S+Wr+Lk
  Lj1g3v4764520.2 265 ASHAIATGSLFTVYYHPWTYPFEFITPVKNYMKSTETDYAIGTRVQMVFEAKECARRN-AGTIIGNEDIDNIKWPGSEWRCLK 346
                      789****************************************************999.9*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.7E-37131247IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-35131268IPR015300DNA-binding pseudobarrel domain
CDDcd100171.72E-21135237No hitNo description
PROSITE profilePS5086312.929137239IPR003340B3 DNA binding domain
PfamPF023628.2E-22137238IPR003340B3 DNA binding domain
SMARTSM010192.0E-22137239IPR003340B3 DNA binding domain
PfamPF065074.4E-26265346IPR010525Auxin response factor
PROSITE profilePS5174517.961558640IPR000270PB1 domain
SuperFamilySSF542773.83E-8562634No hitNo description
PfamPF023092.4E-5599637IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MRRKRDQYSE LEAAATEGLG RRHRCVKDDL CAELWYACAG PVYVPRAGEK VFYYPQGHLE  60
QVAAFTQHQQ DGHMEIPVYD LPSKILCRVI CVHLKAEDYT DEVFAQVTLL PELMQDELNS  120
EDGGTCHIPC RTKTHSFSKI LTPSDTSTHG GFSIPKRLAD ECFRPLDMTH QPPTQELVAK  180
DLHGFEWHFR HIFRGQPKRH LITSGWSTFV NSKKLVAGDS CIFVSGDNGE IRIGFRRAMK  240
QHSYASTSSS LISGHSMQLG ILASASHAIA TGSLFTVYYH PWTYPFEFIT PVKNYMKSTE  300
TDYAIGTRVQ MVFEAKECAR RNAGTIIGNE DIDNIKWPGS EWRCLKVKWD AMPILDTYRH  360
PERVCPWWIE PLDSIKKKRA PMLSLANKRC VLNLPQNSVK SASQRVDRDL QGQDYNGVHS  420
LQPLQSPPST DLLLSLKITN FRTEKPNQLP FLMQEPLHQS LGSSMSFPHE DISTSCSNVN  480
STGSESQGWP SSESKDENDV PFSLPGSCGK YKLFGVSLLD RQPELPSQQF AIFSKISSPP  540
MCVTSRKTWK KCRSVNSRSC TKVLKLGTAL GRAVDLTCFP GYDELISELD QMFDFGGSLI  600
NGSSGWHVTC IDDDGDMMLL GDYPWQDFQS MVQKMIICPR DGMKNFNPSS SAEPTSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-125133742357Auxin response factor 1
4ldw_A1e-125133742357Auxin response factor 1
4ldw_B1e-125133742357Auxin response factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v4764520.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017417210.10.0PREDICTED: auxin response factor 23-like
RefseqXP_017417211.10.0PREDICTED: auxin response factor 23-like
TrEMBLA0A0S3S0L20.0A0A0S3S0L2_PHAAN; Auxin response factor
STRINGGLYMA19G39340.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131052329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61830.11e-135auxin response factor 18