PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v4765140.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family CO-like
Protein Properties Length: 363aa    MW: 40745.4 Da    PI: 5.9165
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v4765140.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.41.1e-062163440
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                     r C+ +++  + l+C+ ++  lC +C  e H+       Ht++
  Lj1g3v4765140.1 21 RPCDYCGHSTAVLYCRADSAKLCFSCDREVHSTnqlfskHTRT 63
                     67******99*********************668888888876 PP
2zf-B_box26.41.4e-0865107542
         zf-B_box   5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                       C+ +++ ++++ C ++++ +C++C  e+H +      H+++pl
  Lj1g3v4765140.1  65 LCDACDDSPATILCSTDSSVFCQNCDWEKH-NpslssvHERRPL 107
                      7*****************************.5489999998875 PP
3CCT59.51.1e-20319361143
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                      R+ allRYk+K+ktR++eK+irYesRKa+AesR R++GrF+k 
  Lj1g3v4765140.1 319 RDSALLRYKQKKKTRRYEKHIRYESRKARAESRIRIRGRFAKM 361
                      899**************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003368.3E-141865IPR000315B-box-type zinc finger
PROSITE profilePS5011910.0961865IPR000315B-box-type zinc finger
CDDcd000219.85E-82165No hitNo description
PfamPF006431.9E-52163IPR000315B-box-type zinc finger
PROSITE profilePS5011910.29661107IPR000315B-box-type zinc finger
CDDcd000215.53E-565107No hitNo description
PfamPF006431.1E-665107IPR000315B-box-type zinc finger
SMARTSM003360.03766107IPR000315B-box-type zinc finger
PfamPF062031.5E-14319361IPR010402CCT domain
PROSITE profilePS5101714.594319361IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MGGSPRNPQP KDEEEAPQLV RPCDYCGHST AVLYCRADSA KLCFSCDREV HSTNQLFSKH  60
TRTLLCDACD DSPATILCST DSSVFCQNCD WEKHNPSLSS VHERRPLEGF TGCPSVTELL  120
SIMGFQDLGK KELFDSSGVA GKTEDGFLGC EIEGLSDLFV WDTPSVFSLD DLISSSGSSH  180
NFQAMEVPPL PKNRKAACGR HKEEILNQLR QLTKSEPLDL EQYVPTENLS TGFEGEMEAD  240
IFSSHEWHRE SNETMYQVVP LESSLRTSNE EVSVKHSTSA GGEAHAYGNN EGQPSNSIKS  300
ETLPTTPRPV PYELASQERD SALLRYKQKK KTRRYEKHIR YESRKARAES RIRIRGRFAK  360
MEH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1327333QKKKTRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.36330.0flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v4765140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1479890.0BT147989.1 Lotus japonicus clone JCVI-FLLj-20D10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027350839.10.0zinc finger protein CONSTANS-LIKE 13
RefseqXP_027350840.10.0zinc finger protein CONSTANS-LIKE 13
RefseqXP_027350841.10.0zinc finger protein CONSTANS-LIKE 13
TrEMBLA0A4D6MDS40.0A0A4D6MDS4_VIGUN; Zinc finger protein CONSTANS
STRINGAES820840.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70553145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.14e-94B-box type zinc finger protein with CCT domain