PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v4809900.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 125aa    MW: 14526.1 Da    PI: 11.0248
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v4809900.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.51.2e-162269152
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52
                     +gy+GVr +  +g+Wv+ Ir+p++   + r++lg+f t+e+Aa a++  +++
  Lj1g3v4809900.1 22 PGYRGVRMRA-WGKWVSKIREPRK---KNRIWLGTFATPEMAAHAHDVTALA 69
                     79*****998.**********854...59******************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.53E-232270No hitNo description
PfamPF008475.2E-112269IPR001471AP2/ERF domain
SMARTSM003804.5E-202386IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-172370IPR016177DNA-binding domain
PROSITE profilePS5103218.7292383IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-242470IPR001471AP2/ERF domain
PRINTSPR003678.4E-102435IPR001471AP2/ERF domain
PRINTSPR003678.4E-104662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MLLLPPPQNH PKLPRESNGK HPGYRGVRMR AWGKWVSKIR EPRKKNRIWL GTFATPEMAA  60
HAHDVTALAL PCSTSLTSQV HCPDPNPNRL ETILDLGFAL EPLQFRIWVL SMRFWIWVRI  120
MVDPW
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v4809900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004503470.11e-29ethylene-responsive transcription factor TINY-like
SwissprotQ9LYD31e-24DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A1S2YE323e-28A0A1S2YE32_CICAR; ethylene-responsive transcription factor TINY-like
STRINGXP_004503470.15e-29(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.16e-27ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]