PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v4849490.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family WRKY
Protein Properties Length: 251aa    MW: 28568.4 Da    PI: 4.3147
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v4849490.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.73.2e-3054112259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D ++WrKYGqK++kgs++pr+YY+C+++ gC++kk+ver+++d ++++itY+++Hnh+
  Lj1g3v4849490.1  54 SDFWSWRKYGQKPIKGSPYPRGYYKCSTSkGCSAKKQVERCRTDSSMLIITYTSTHNHP 112
                      699***********************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.2E-3243114IPR003657WRKY domain
PROSITE profilePS5081131.83548114IPR003657WRKY domain
SuperFamilySSF1182905.62E-2651114IPR003657WRKY domain
SMARTSM007742.1E-3553113IPR003657WRKY domain
PfamPF031063.4E-2555112IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MENNASPQLE SEASLELKLE TQASKKQKMV EKTVVTVKIG ENVSKVKKNE GLPSDFWSWR  60
KYGQKPIKGS PYPRGYYKCS TSKGCSAKKQ VERCRTDSSM LIITYTSTHN HPGPTTNLPQ  120
QQQKESESET TENLPGTLKE EEEQEQVENF PATLKEEEEQ EQIENLPATL KEEEEQEQIE  180
VEEEEVNTNS SSTMTSSDQG ANEEIFHYLQ SPIIDQEEDP FKLEKNNDRI DLLLEAEPLC  240
YAAQVRNLST S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-2444115380Disease resistance protein RRS1
5w3x_D1e-2444115380Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v4849490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1392850.0BT139285.1 Lotus japonicus clone JCVI-FLLj-13K23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003625977.13e-95probable WRKY transcription factor 35
TrEMBLI3SFN81e-179I3SFN8_LOTJA; Uncharacterized protein
STRINGAES821951e-94(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97083241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.17e-37WRKY DNA-binding protein 35