PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v4851630.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family GRAS
Protein Properties Length: 206aa    MW: 23427 Da    PI: 5.6718
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v4851630.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS126.43.3e-392220129206
             GRAS  29 elaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsevsPilkfshltaNqaIleavegeervHiiDfdis 120
                        +  +g+++qR++++f+eAL++r+ r++ ++ k  + +e+ e   ++     k    ++  P+ ++ ++t  qa++e v+ge+++H iD+di+
  Lj1g3v4851630.1  22 SSSYASGNTVQRVVFHFAEALKERIDRETGRITKGSEKNEEME-LLQKMGGTNKSllCHQKIPFNQVMQFTGVQAMVEHVAGETKIHLIDLDIK 114
                      4455678********************7777776554444432.23333333333347899********************************* PP

             GRAS 121 qGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnl 206
                       G+Q +aL+qaLa+R+    +   ++i ++g   +  k+++e tg+rLa+fAe+l+++f++++++++++++++ ++L+v+++Ea+++ +
  Lj1g3v4851630.1 115 CGVQCIALMQALAERQnsmVKVKFFKISAIGL--KACKTKIEDTGKRLANFAESLNLTFSYKPVLVTDMAEFKEDHLEVEEDEAVVIYS 201
                      ****************5444467899******..45**************************************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098522.1811206IPR005202Transcription factor GRAS
PfamPF035141.1E-3622201IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MEMWNLFSFS LLQLSLQYQW NSSSYASGNT VQRVVFHFAE ALKERIDRET GRITKGSEKN  60
EEMELLQKMG GTNKSLLCHQ KIPFNQVMQF TGVQAMVEHV AGETKIHLID LDIKCGVQCI  120
ALMQALAERQ NSMVKVKFFK ISAIGLKACK TKIEDTGKRL ANFAESLNLT FSYKPVLVTD  180
MAEFKEDHLE VEEDEAVVIY SPDADY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-162719936205GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v4851630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003625975.24e-86DELLA protein RGL1
TrEMBLG7KSU29e-85G7KSU2_MEDTR; GRAS family transcription factor
STRINGAES821933e-85(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-19GRAS family protein