PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v4865580.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 257aa    MW: 29124 Da    PI: 5.831
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v4865580.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.1e-1981129355
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ ++k++g
  Lj1g3v4865580.1  81 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREARKIRG 129
                      9*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.4E-3980143IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-3280138IPR001471AP2/ERF domain
PROSITE profilePS5103223.77580137IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-2280138IPR016177DNA-binding domain
PRINTSPR003676.0E-128192IPR001471AP2/ERF domain
CDDcd000186.67E-3381138No hitNo description
PfamPF008474.7E-1281129IPR001471AP2/ERF domain
PRINTSPR003676.0E-12103119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0034059Biological Processresponse to anoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MCGGAIIADF IPHHGSRRVT ASELWPNTFA KHNDSQFDSS HHPQHHQCSD SAPLKRSQPS  60
PAATVNEQVD KPLKRQRKNL YRGIRQRPWG KWAAEIRDPR KGVRVWLGTF NTAEEAARAY  120
DREARKIRGK KAKVNFPNED DDHFSIQFQA PPLFQQGCGL NSNEVNVPKT QTFQFAYDLN  180
QESCAGFGSA SGSSVEAEEE GVGNEERKTN QVEKLSEELM AFDDYMGFYQ VPYYEEQSNA  240
SVHETVVGDL WNFDAEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-21811391574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.109260.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v4865580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001241423.17e-94uncharacterized protein LOC100819416
RefseqXP_028193163.17e-94ethylene-responsive transcription factor ERF073-like
TrEMBLA0A445LI952e-92A0A445LI95_GLYSO; Ethylene-responsive transcription factor RAP2-3
TrEMBLD9ICY52e-92D9ICY5_SOYBN; ERF protein
STRINGGLYMA02G01960.13e-93(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67713449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.13e-39ERF family protein