PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v4957710.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family GeBP
Protein Properties Length: 398aa    MW: 43807.5 Da    PI: 4.5689
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v4957710.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573121.83.4e-38108203297
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 
                      lfqrlw++eDe+ lLqG++d+++++g+s + d+  fy+++k++++++++ksqlveKirrLKkK+++ v++++sgk++sf+++hdq +fe+s+ki
  Lj1g3v4957710.1 108 LFQRLWTDEDEMELLQGFLDYTTQRGSSNQTDTALFYDQIKSKLQLDFNKSQLVEKIRRLKKKYRNVVNRISSGKDFSFKTAHDQATFEVSRKI 201
                      79*************************9999*************************************************************** PP

           DUF573  96 Wg 97 
                      Wg
  Lj1g3v4957710.1 202 WG 203
                      *8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045045.4E-35109203IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MASEQHDTVF PQQDMDDDDE DSHEDEEYDD DVLPDDDESE PSPPASSALA VTVAVPSSSI  60
SNGATTTVPI QSSAATTIVT PYSDPKRHRT EPIEEKKPPP PPDDSRRLFQ RLWTDEDEME  120
LLQGFLDYTT QRGSSNQTDT ALFYDQIKSK LQLDFNKSQL VEKIRRLKKK YRNVVNRISS  180
GKDFSFKTAH DQATFEVSRK IWGNVTPIAA TDDMIAVDDD EINLNPAPNP NPNHNFSSPV  240
LKYEVIFGNS TEKKTRKRSR PSPAIKSVEK RELNLNDGAA CSKDRNVTTA ATTNAASDNC  300
DSGNGNVAGL IEETVKSCLS PLLKELVAGA MRGPFGARGL SPVGLMNLGF GELVDEKWRK  360
QQILELEVYS KRLELVQDQV KATMEELRSS GGGGGGGV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.136330.0cell culture| protoplast
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v4957710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0096310.0AP009631.1 Lotus japonicus genomic DNA, clone: LjB12P21, BM1702, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004494676.11e-156probable transcription factor At3g04930
TrEMBLA0A1S2XWD21e-155A0A1S2XWD2_CICAR; probable transcription factor At3g04930
STRINGXP_004494676.11e-155(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32553365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.13e-80DNA-binding storekeeper protein-related transcriptional regulator