PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v5020820.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family Whirly
Protein Properties Length: 235aa    MW: 26062.9 Da    PI: 9.7127
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v5020820.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly2027.3e-63571922137
           Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalk 95 
                      vyk+kaa+++ +v+ptf++ldsg+l+++r+G++++ +++a++erkydWek+q+falsatev++l+ +++++sceffhdp++ +sn+G+vrk+l+
  Lj1g3v5020820.1  57 VYKGKAAMSLSPVLPTFTKLDSGALVVERRGSIMMVFTPAIGERKYDWEKRQKFALSATEVGSLIAMGPQDSCEFFHDPSMSSSNAGQVRKSLS 150
                      8********************************************************************************************* PP

           Whirly  96 vePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
                      ++P+++ sG+fv+l+v n+l++++e+f vPv+ aefav++++
  Lj1g3v5020820.1 151 IKPHANSSGYFVSLTVVNNLLNAKENFNVPVTTAEFAVMKTA 192
                      ****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.101.4E-7545211IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544474.16E-6549233IPR009044ssDNA-binding transcriptional regulator
PfamPF085365.4E-6057191IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MLKLLRVLPS TSRNWVLEME VLSSSRNPQV RDFSTAARET YVAKGYTTDR VFAPYYVYKG  60
KAAMSLSPVL PTFTKLDSGA LVVERRGSIM MVFTPAIGER KYDWEKRQKF ALSATEVGSL  120
IAMGPQDSCE FFHDPSMSSS NAGQVRKSLS IKPHANSSGY FVSLTVVNNL LNAKENFNVP  180
VTTAEFAVMK TACSFALPHI MGWDRLTNQQ SSLPGGTVGL QSKVDKPVFD LEWDK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kop_A2e-86482098169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B2e-86482098169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C2e-86482098169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D2e-86482098169Single-stranded DNA-binding protein WHY2, mitochondrial
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.157800.0floral bud
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that associates with mitochondrial DNA and may play a role in the regulation of the gene expression machinery. Seems also to be required to prevent break-induced DNA rearrangements in the mitochondrial genome. Can bind to melt double-stranded DNA in vivo. {ECO:0000269|PubMed:18423020, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:22762281}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v5020820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1374390.0BT137439.1 Lotus japonicus clone JCVI-FLLj-2P20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003626470.11e-124single-stranded DNA-binding protein WHY2, mitochondrial
SwissprotQ8VYF72e-88WHY2_ARATH; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLI3SAE21e-175I3SAE2_LOTJA; Uncharacterized protein
STRINGAES826881e-124(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113833338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.11e-90WHIRLY 2