PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v0092560.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family B3
Protein Properties Length: 391aa    MW: 43901.5 Da    PI: 5.8144
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v0092560.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.52.2e-17199286297
                      EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                      fk+ ++s++     l +p kfae++ +kk +  ++ le ++grsW  ++  + ++    +++GW++Fv +n+Lk+gD+++F+l++++  +++v 
  Lj2g3v0092560.1 199 FKIVMKSSYIGGYSLHIPSKFAETYLKKKDG--DIFLEVLDGRSWHGTY--DLYK----IKNGWRQFVLDNNLKAGDVCLFELTKKQPLSFKVL 284
                      57777788888888***********656444..8***************..6665....99*********************998888877887 PP

                      EE CS
               B3  96 vf 97 
                      +f
  Lj2g3v0092560.1 285 IF 286
                      77 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.278165IPR003340B3 DNA binding domain
CDDcd100172.86E-7262No hitNo description
SuperFamilySSF1019365.3E-10372IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-10464IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.9E-23194286IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.82E-22195287IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.592198289IPR003340B3 DNA binding domain
CDDcd100177.64E-22199287No hitNo description
SMARTSM010192.9E-14199289IPR003340B3 DNA binding domain
PfamPF023627.4E-15199286IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MSNPVILKPP DDTKWEIHWS KHDSEIWFQK GLKEFAKYYS LDHGHLVLFE FKDASNFEVR  60
IFGKGTLEIE YPMIHGNQDE QNNNLDQMSD NSVEILDELP PCKKTRLKSP ISKTQPHRKL  120
RAGITGDVGS SSRLKNYSKQ VKVEGNQSQD ANFEKSTFEP DQNKLEENMD GTSGFEHLTP  180
KITEGLKRGT TLRSINPSFK IVMKSSYIGG YSLHIPSKFA ETYLKKKDGD IFLEVLDGRS  240
WHGTYDLYKI KNGWRQFVLD NNLKAGDVCL FELTKKQPLS FKVLIFPLEE EPYPHSPQGS  300
RCHLPWLSIS NFFVSLRRVL ACFSVTMEVL CSAMASPVAG SVASKGGQVT GFDGGDADEE  360
ETEDGMEGPN QSMEGGLVGP EQRSGGDDGF L
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v0092560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019459425.17e-85PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X1
TrEMBLA0A396JLG17e-85A0A396JLG1_MEDTR; Putative transcription factor B3-Domain family
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-26B3 family protein