PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v0286950.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB_related
Protein Properties Length: 217aa    MW: 24489.9 Da    PI: 5.0318
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v0286950.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.22.1e-0914382348
                     -HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48
                     +W+ I+++++ gRt++++k++w++yl
  Lj2g3v0286950.1 14 RWSQISQHLP-GRTDNEIKNYWHSYL 38
                     5*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.186142IPR017930Myb domain
CDDcd001671.12E-7938No hitNo description
SuperFamilySSF466891.25E-81344IPR009057Homeodomain-like
PfamPF002492.3E-71438IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-121439IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MESAERNLIY ILIRWSQISQ HLPGRTDNEI KNYWHSYLKK KVLKPHEMEP HSQTQHASSS  60
SDTKDSSLST QKLSIQDPNY GILENMEKST PQYSDHHLSQ NYNLAKDTSQ SSLPKLLFAE  120
WLSVEHVNAG GSSVNSEDSL VNGFDQTSTF QEPVMNMSGG HFGEEFHDSL IHNSATAMYN  180
SQLNLPGQGD ENDYVHYIQG GDLCSNFTLS IDSIMYV
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v0286950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027359123.15e-88transcription factor LAF1-like
TrEMBLA0A0S3TBJ91e-78A0A0S3TBJ9_PHAAN; Uncharacterized protein
STRINGGLYMA16G31280.16e-76(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38303161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.18e-14myb domain protein 18