PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v0473830.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 228aa    MW: 26536.2 Da    PI: 7.852
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v0473830.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH406.9e-1361110455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h e+Er+RR+++ s ++ Lr+llP  +   ++K s +e   +A +YIk++q
  Lj2g3v0473830.1  61 VHREIERKRRQDMASFYASLRSLLPLEF--IKGKRSLSEHINEAANYIKHMQ 110
                      69************************65..*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.93E-1355126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.40E-955114No hitNo description
PROSITE profilePS5088812.70357109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.8E-1061126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-1061110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-563115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MFPLQRGNEL VIKFSSSPHQ QQHKIPEDLI LDEMITSSQP REQFFRAEMS KDHHKSKKIM  60
VHREIERKRR QDMASFYASL RSLLPLEFIK GKRSLSEHIN EAANYIKHMQ NNLKELGAKR  120
DELKKLSHNF MLENHESNNT TNNFTVHENN GILGIEITSD FKEESLKLSK LLHLLHEEGH  180
DVVNWFSTEL DGRLVYSVQC KVNNSNSLDL SELKRKVANA IPTFICSD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16570ERKRRQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.21400.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v0473830.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003548234.11e-107transcription factor bHLH118
RefseqXP_028206682.11e-107transcription factor bHLH118-like
TrEMBLA0A0B2RHW11e-106A0A0B2RHW1_GLYSO; Transcription factor bHLH126
TrEMBLI1MQ591e-106I1MQ59_SOYBN; Uncharacterized protein
STRINGGLYMA16G32620.11e-106(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79233125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.17e-35bHLH family protein