PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj2g3v0635520.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

C2H2

Protein Properties

Length: 423aa MW: 47422.5 Da PI: 9.8823

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj2g3v0635520.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.7	4.9e-06	60	82	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H Lj2g3v0635520.1 60 YVCEICNQGFQRDQNLQMHRRRH 82 9*********************9 PP
2	zf-C2H2	14.6	9.7e-05	137	159	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k + +s++k H++t+ Lj2g3v0635520.1 137 WVCERCSKGYAVQSDYKAHLKTC 159 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.35E-5	57	83	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.7E-5	59	82	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.97	60	82	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0052	60	82	IPR015880	Zinc finger, C2H2-like
Pfam	PF12874	0.021	60	78	No hit	No description
PROSITE pattern	PS01359	0	62	142	IPR019786	Zinc finger, PHD-type, conserved site
PROSITE pattern	PS00028	0	62	82	IPR007087	Zinc finger, C2H2
SMART	SM00355	190	101	131	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	6.1E-4	128	158	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	100	137	164	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence Send to blast
MMLANNLSPS SVPTSDPFSC TENGTSTAIN KRKRRPAGTP DPDAEVVSLS PKTLLESDRY 60 VCEICNQGFQ RDQNLQMHRR RHKVPWKLLK RETPVVRKRV FVCPEPTCLH HDPCHALGDL 120 VGIKKHFRRK HSNHKQWVCE RCSKGYAVQS DYKAHLKTCG TRGHSCDCGR VFSRVESFIE 180 HQDACNMGRL RPESQPLQQQ PPAACLSRTA SSPSPSSETN FSTGPWQTRL QVVPPKPIEV 240 PTIFMNPTPI HPPPETSSKN NNKLHPNLEL QLQLSTTNNK SSNPIELPSP KNDQNIKYST 300 QLQLSIGSPN SREKNEASNN RNLSPKESSN SIHEKERPLG GGGGSGGGGA NMALMRNIQE 360 QARENLRIAM AEKAYAEEAR KQAKRQIEIA EQEFTNAKRI RQQAQAELDK AYNLKEHAMK 420 QVN

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence Send to blast

MMLANNLSPS SVPTSDPFSC TENGTSTAIN KRKRRPAGTP DPDAEVVSLS PKTLLESDRY  60
VCEICNQGFQ RDQNLQMHRR RHKVPWKLLK RETPVVRKRV FVCPEPTCLH HDPCHALGDL  120
VGIKKHFRRK HSNHKQWVCE RCSKGYAVQS DYKAHLKTCG TRGHSCDCGR VFSRVESFIE  180
HQDACNMGRL RPESQPLQQQ PPAACLSRTA SSPSPSSETN FSTGPWQTRL QVVPPKPIEV  240
PTIFMNPTPI HPPPETSSKN NNKLHPNLEL QLQLSTTNNK SSNPIELPSP KNDQNIKYST  300
QLQLSIGSPN SREKNEASNN RNLSPKESSN SIHEKERPLG GGGGSGGGGA NMALMRNIQE  360
QARENLRIAM AEKAYAEEAR KQAKRQIEIA EQEFTNAKRI RQQAQAELDK AYNLKEHAMK  420
QVN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	3e-17	135	186	5	56	Zinc finger protein JACKDAW
5b3h_F	3e-17	135	186	5	56	Zinc finger protein JACKDAW
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in cotyledons and the vasculature of reosette leaves. Weak expression in hypocotyls and floral organs, but not detected in roots and inflorescence stems. {ECO:0000269\|PubMed:24039602}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269\|PubMed:21556057, ECO:0000269\|PubMed:24039602}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj2g3v0635520.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by auxin. {ECO:0000269\|PubMed:24039602}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	1e-131	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007152626.1	0.0	hypothetical protein PHAVU_004G145900g
Swissprot	Q9C9X7	1e-127	IDD14_ARATH; Protein indeterminate-domain 14
TrEMBL	V7C5Q2	0.0	V7C5Q2_PHAVU; Uncharacterized protein
STRING	XP_007152626.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1769	32	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	1e-125	indeterminate(ID)-domain 14

Publications ? help Back to Top
Arendsee ZW,Li L,Wurtele ES Coming of age: orphan genes in plants. Trends Plant Sci., 2014. 19(11): p. 698-708 [PMID:25151064] Qu Y, et al. Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis. J. Exp. Bot., 2017. 68(17): p. 4851-4867 [PMID:28992128]