PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v0635660.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ZF-HD
Protein Properties Length: 171aa    MW: 18630.8 Da    PI: 8.3288
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v0635660.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer86.62.6e-271566257
      ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                     +++ Y+eCl+NhAa+lG++a+DGCgEf+ +      a +l+CaACgCHRnFHR+ +
  Lj2g3v0635660.1 15 SNCLYRECLRNHAATLGSYATDGCGEFTLD----DPAGSLQCAACGCHRNFHRKVT 66
                     5789*************************8....3467****************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047705.3E-221766IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.7E-221964IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-161964IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152323.3771965IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.06E-1583154IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-2685154IPR009057Homeodomain-like
TIGRFAMsTIGR015651.3E-2795153IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MEGGAMISSS ENSSSNCLYR ECLRNHAATL GSYATDGCGE FTLDDPAGSL QCAACGCHRN  60
FHRKVTCPPP SSNMRDLSEL TEYSGGGGSG GEGRRKRYRT KFTVEQKEKM LGFAEKLGWK  120
LQRKELEGEI EAFCRSVGVS RQVFKVWMHN HKNSCSSNAS ASNGNASSLT Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-21961571878ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v0635660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028785051.19e-76zinc-finger homeodomain protein 1-like
RefseqXP_028805511.19e-76zinc-finger homeodomain protein 1-like
SwissprotB8AX535e-39ZHD6_ORYSI; Zinc-finger homeodomain protein 6
TrEMBLA0A072UBE02e-74A0A072UBE0_MEDTR; Putative transcription factor ZF-HD family
STRINGXP_008467173.12e-73(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79822844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.15e-33homeobox protein 22